YRC Public Data Repository - Protein Structure Prediction

Protein:	coq3
Organism:	Schizosaccharomyces pombe
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for coq3.

Description	E-value	Query Range	Subject Range
gi\|90331742, gi\|... - gi\|90416543\|ref\|ZP_01224474.1\| 3-demethylubiquinone-9 3-methyltransferase [marine gamma proteobacter... gi\|90416543\|ref\|... - 3-demethylubiquinone-9 3-methyltransferase [marine gamma proteobacterium HTCC2207]	183.0	[0..21]	[269..5]
gi\|89081582, gi\|... - gi\|89094107\|ref\|ZP_01167050.1\| 3-demethylubiquinone-9 3-methyltransferase [Oceanospirillum sp. MED92...	181.0	[0..20]	[268..2]
gi\|74151345 - gi\|74151345\|dbj\|BAE38796.1\| unnamed protein product [Mus musculus]	180.0	[0..3]	[270..9]
gi\|46141539, gi\|... - gi\|71064702\|ref\|YP_263429.1\| 3-demethylubiquinone-9 3-methyltransferase [Psychrobacter arcticus 273-...	177.0	[0..29]	[270..29]
gi\|221730042, gi... - gi\|222110598\|ref\|YP_002552862.1\| ubiquinone biosynthesis O-methyltransferase [Diaphorobacter sp. TPS... gi\|120606883, gi... - gi\|121594803\|ref\|YP_986699.1\| 3-demethylubiquinone-9 3-methyltransferase [Acidovorax sp. JS42], gi\|1...	176.0	[0..25]	[270..2]
UBIG_PSEAB - Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ubiG PE... gi\|107102701 - gi\|107102701\|ref\|ZP_01366619.1\| hypothetical protein PaerPA_01003767 [Pseudomonas aeruginosa PACS2] gi\|126195237, gi... - gi\|84326079\|ref\|ZP_00974109.1\| COG2227: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol met... gi\|84319998, gi\|... - gi\|84319998\|ref\|ZP_00968384.1\| COG2227: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol met...	176.0	[0..28]	[269..2]

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Predicted Domain #1

Region A:
Residues: [1-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILNKVKNV KSYTRLVRQG FLSQQRNHSV SVNEVDHFNE LAKTWWDWDG GSRLLHLMNS  60
   61 TRLDFMTEVF RERNCFSGKK ILDIGCGGGI LSESMARLGA SVTAVDASPM AIEVAKKHAS 120
  121 LDPVLNGRLE YIHGSVEGSQ LPTTFDVVTC MEVLEHVEQP RDFLFSLMEK VKPNGRLVLS 180
  181 TISRTLLARL LTITLAEHVL RIVPVGTHTF EKFIRADELS NFLKEQNWII NDIRGVCYNP 240
  241 LKQQWTLDKP GSSGLGLSCN YFLSAQKPMS A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1kp9A
Description:	CmaA1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.25333584501255	bayes_pls_golite062009
transferase activity	1.07321114919891	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.612108481676679	bayes_pls_golite062009
methyltransferase activity	0.606225212585352	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.14147363365106	bayes_pls_golite062009
binding	0.109975487409217	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: