YRC Public Data Repository - Protein Structure Prediction

Protein:	coq2
Organism:	Schizosaccharomyces pombe
Length:	358 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for coq2.

Description	E-value	Query Range	Subject Range
gi\|71005862, gi\|... - gi\|71005862\|ref\|XP_757597.1\| hypothetical protein UM01450.1 [Ustilago maydis 521], ref\|XP_399065.1\| ...	237.0	[0..7]	[355..571]
COQ2_RAT - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Rattus norvegicus GN=Coq2 PE=2 SV=1	220.0	[0..10]	[352..17]
COQ2_MOUSE - Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Mus musculus GN=Coq2 PE=2 SV=1	219.0	[0..13]	[352..20]
COQ2_BOVIN - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Bos taurus GN=COQ2 PE=2 SV=1	219.0	[0..16]	[352..24]
3825.m02509, 128... - /numExons=12 /strand=- /begin=98461 /end=104446 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords... gi\|89295687, gi\|... - gi\|89295687\|gb\|EAR93675.1\| 4-hydroxybenzoate polyprenyl transferase family protein [Tetrahymena ther...	219.0	[0..57]	[351..970]
gi\|114593901 - gi\|114593901\|ref\|XP_526592.2\| PREDICTED: para-hydroxybenzoate-polyprenyltransferase, mitochondrial i...	216.0	[0..13]	[351..70]
COQ2_DROPS - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=... gi\|125775189, gi... - gi\|54638587\|gb\|EAL27989.1\| GA21912 [Drosophila pseudoobscura pseudoobscura], gi\|125775189\|ref\|XP_001...	216.0	[0..23]	[352..43]
gi\|52138578, gi\|... - gi\|52138578\|ref\|NP_056512.3\| para-hydroxybenzoate-polyprenyltransferase, mitochondrial [Homo sapiens...	214.0	[0..13]	[351..70]
Coq2-PA - The gene Coenzyme Q biosynthesis protein 2 is referred to in FlyBase by the symbol Dmel\Coq2 (CG9613... gi\|220949886 - gi\|220949886\|gb\|ACL87486.1\| Coq2-PA [synthetic construct]	212.0	[0..36]	[352..51]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIKPIASPA RYFLRTPSWS AVAIFQAVKI KPLQLRTNSS NSVTPNLISP SKKSWKDLFS  60
   61 KRWQYYAEIS RAGSPTGTYL LYSPCTWSIL MAAYAYDSSL VNVTKMLALF GVGSFLMRSA 120
  121 GCVINDLWDR ELDAKVERSK SRPLASGKLS VRQAISLLSV QLTASLGILL QLNPYTIKLG 180
  181 VASLVPVCIY PAMKRITYYP QVVLGLTFGY GAVMGWPALA GEAC

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [225-358]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWSVVAPLY LSTISWIVLY DTIYAHQDKR DDVKANIYST ALRFGDNTKP VLCGLAALQI  60
   61 ATLATAGIMN GQGPVFYTLG VAGAAYRLSS MIYKVDLDDP KDCFRWFKRN SNTGYLVAAA 120
  121 IALDWLAKSF IYDS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.719	N/A	N/A	a.24.4	Hemerythrin
View	Download	0.704	N/A	N/A	a.46.1	Methionine synthase domain
View	Download	0.704	N/A	N/A	a.24.4	Hemerythrin
View	Download	0.690	N/A	N/A	a.19.1	Fertilization protein
View	Download	0.674	N/A	N/A	a.24.16	Nucleotidyltransferase substrate binding subunit/domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits