YRC Public Data Repository - Protein Structure Prediction

Protein:	ret3
Organism:	Schizosaccharomyces pombe
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ret3.

Description	E-value	Query Range	Subject Range
gi\|49646635 - gi\|49646635\|emb\|CAG83019.1\| YALI0B11682p [Yarrowia lipolytica] gi\|50546599, gi\|... - gi\|50546599\|ref\|XP_500769.1\| YALI0B11682p [Yarrowia lipolytica], gi\|49646635\|emb\|CAG83019.1\| unnamed...	179.0	[0..7]	[184..1]
gi\|62089202 - gi\|62089202\|dbj\|BAD93045.1\| adaptor-related protein complex 1, mu 1 subunit variant [Homo sapiens]	178.0	[0..9]	[184..35]
gi\|73966201 - gi\|73966201\|ref\|XP_548170.2\| PREDICTED: similar to Coatomer zeta-2 subunit (Zeta-2 coat protein) (Ze...	178.0	[0..2]	[187..77]
gi\|28949965 - gi\|28949965\|emb\|CAD70726.1\| probable clathrin assembly protein AP47 [Neurospora crassa]	178.0	[0..7]	[184..1]
gi\|42554497, gi\|... - gi\|46130854\|ref\|XP_389158.1\| hypothetical protein FG08982.1 [Gibberella zeae PH-1], gi\|42554497\|gb\|E...	177.0	[0..7]	[184..1]
gi\|119183349, gi... - gi\|90301509\|gb\|EAS31140.1\| hypothetical protein CIMG_06619 [Coccidioides immitis RS], gi\|119183349\|r...	177.0	[0..7]	[184..1]
gi\|70997882, gi\|... - gi\|70997882\|ref\|XP_753673.1\| AP-1 adaptor complex subunit mu [Aspergillus fumigatus Af293], gi\|66851... gi\|159126594 - gi\|159126594\|gb\|EDP51710.1\| AP-1 adaptor complex subunit mu, putative [Aspergillus fumigatus A1163]	176.0	[0..7]	[184..1]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLTLYAVNA FLILDSSGKR IFTKYYAPPH LKEGEGGVFN SVKEEKTFEK GLFEKTWKTQ  60
   61 NDILTYDGKL VVMLTVMDVI FYIVGGMEEN EVMLYECLRS IRDALELLFK YVPDKRTLLE 120
  121 NYDQLVIVVD ETIDDGVILE TEPALIAARV TKGPVSEAQA IVSDFKEMGF MNSFQKAREK 180
  181 ITERILKGTF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.045757
Match:	2hf6A
Description:	No description for 2hf6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits