YRC Public Data Repository - Protein Structure Prediction

Protein:	adf1
Organism:	Schizosaccharomyces pombe
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for adf1.

Description	E-value	Query Range	Subject Range
gi\|48374972 - gi\|48374972\|gb\|AAT42170.1\| putative actin depolymerizing factor [Sorghum bicolor]	181.0	[0..2]	[134..328]
gi\|84028521 - gi\|84028521\|gb\|ABC49719.1\| actin depolymerizing factor-like protein [Arachis hypogaea]	171.0	[0..2]	[135..4]
ADF1_ARATH - Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1 gi\|195604826 - gi\|195604826\|gb\|ACG24243.1\| hypothetical protein [Zea mays]	169.0	[0..2]	[135..4]
ADF1_PETHY - Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1	168.0	[0..2]	[135..4]
gi\|38564721 - gi\|38564721\|gb\|AAR23800.1\| putative actin-depolymerizing factor 2 [Helianthus annuus]	167.0	[0..2]	[135..4]
gi\|92897576 - gi\|92897576\|gb\|ABE93742.1\| Actin-binding, cofilin/tropomyosin type [Medicago truncatula]	167.0	[0..2]	[135..4]
gi\|89212812 - gi\|89212812\|gb\|ABD63906.1\| actin depolymerizing factor 2 [Gossypium hirsutum]	166.0	[0..2]	[135..4]
COFI_YARLI - Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1 COFI_YARLI - Cofilin OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COF1 PE=3 SV=1	166.0	[0..1]	[136..11]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSGVKVSP ECLEAFQELK LGKSLRYVVF KMNDTKTEIV VEKKSTDKDF DTFLGDLPEK  60
   61 DCRYAIYDFE FNLGEGVRNK IIFISWSPDV APIKSKMVYS SSKDTLRRAF TGIGTDIQAT 120
  121 DFSEVAYETV LEKVTRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.30103
Match:	2i2qA
Description:	No description for 2i2qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits