YRC Public Data Repository - Protein Structure Prediction

Protein:	clc1
Organism:	Schizosaccharomyces pombe
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clc1.

Description	E-value	Query Range	Subject Range
gi\|2951785, gi\|1... - gi\|2951785\|dbj\|BAA25104.1\| clathrin light chain [Schizosaccharomyces pombe], gi\|11282549\|pir\|\|T43331...	218.0	[0..6]	[229..1]
gi\|73971344 - gi\|73971344\|ref\|XP_866787.1\| PREDICTED: similar to clathrin, light polypeptide A isoform a isoform 3...	211.0	[0..6]	[213..3]
gi\|225494, gi\|510 - gi\|510\|emb\|CAA28542.1\| unnamed protein product [Bos taurus], gi\|225494\|prf\|\|1304303B clathrin LCa	207.0	[0..6]	[213..3]
CLCA_MOUSE - Clathrin light chain A OS=Mus musculus GN=Clta PE=1 SV=1	207.0	[0..6]	[213..3]
gi\|30585415, gi\|... - gi\|60653991\|gb\|AAX29688.1\| clathrin light polypeptide [synthetic construct], gi\|30585415\|gb\|AAP36980...	205.0	[0..13]	[213..20]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQFPALEDF DDGLVTAPVD DSKNNTDFLE REKLALGEDA GQFETPEDKD ALLNFENDSE  60
   61 AEQTRFEQNF PPIDAEMQAS GTFSAPKAPY MGQAEVHPPE D

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [102-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESGDPEPVRK WKEDQMKRIQ ERDESSKKLR ESNIEKARKA IDDFYENFND KRDKVIAKSR  60
   61 KEQEKLLEEN ESKSTGTTSW ERILKLIDLS DKPEAHGRST ERFRELLISL AKDSNAPGAA 120
  121 GTTVSSSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.522879
Match:	1xi4J
Description:	Clathrin D6 Coat
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits