YRC Public Data Repository - Protein Structure Prediction

Protein:	chs2
Organism:	Schizosaccharomyces pombe
Length:	926 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for chs2.

Description	E-value	Query Range	Subject Range
CHSC_EMENI - Chitin synthase C OS=Emericella nidulans GN=chsC PE=3 SV=2 gi\|49094484, gi\|... - gi\|67536792\|ref\|XP_662170.1\| hypothetical protein AN4566.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	959.0	[0..19]	[918..7]
gi\|83774827, gi\|... - gi\|83774827\|dbj\|BAE64950.1\| unnamed protein product [Aspergillus oryzae], gi\|19071965\|dbj\|BAB85684.1... gi\|169783242 - gi\|169783242\|ref\|XP_001826083.1\| hypothetical protein [Aspergillus oryzae RIB40]	959.0	[0..20]	[912..9]
gi\|4519181, gi\|7... - pir\|\|A59054 chitin synthase (EC 2.4.1.16) CHS1 - Emericella nidulans, gi\|4519181\|dbj\|BAA75501.1\| ch...	959.0	[0..19]	[918..7]
gi\|90304943, gi\|... - gi\|90304943\|gb\|EAS34574.1\| chitin synthase 1 [Coccidioides immitis RS], gi\|119191101\|ref\|XP_00124615...	945.0	[0..19]	[912..7]
gi\|114191799, gi... - gi\|115398654\|ref\|XP_001214916.1\| chitin synthase 2 [Aspergillus terreus NIH2624], gi\|114191799\|gb\|EA...	944.0	[0..19]	[911..9]
gi\|9082308 - gi\|9082308\|gb\|AAF82801.1\|AF276826_1 class I chitin synthase [Coccidioides posadasii]	942.0	[0..19]	[914..7]
gi\|159128736 - gi\|159128736\|gb\|EDP53850.1\| chitin synthase A [Aspergillus fumigatus A1163] gi\|66846953, gi\|... - gi\|70988943\|ref\|XP_749322.1\| chitin synthase A [Aspergillus fumigatus Af293], gi\|66846953\|gb\|EAL8728...	935.0	[0..32]	[909..1]
CHS2_EXODE - Chitin synthase 2 OS=Exophiala dermatitidis GN=CHS2 PE=3 SV=2	923.0	[0..22]	[910..7]
gi\|19068022 - gi\|19068022\|gb\|AAL23717.1\| chitin synthase A [Glomerella graminicola]	918.0	[0..23]	[912..1]
CHS3_NEUCR - Chitin synthase 3 OS=Neurospora crassa GN=chs-3 PE=3 SV=2 CHS3_NEUCR - Chitin synthase 3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGS...	911.0	[0..41]	[912..8]

Back

Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQNPSYIN AKHRSFLQPK DTQDSQDLRN WVSHSSVDEE TAYSSSTLSS SSSKSFPCYD  60
   61 EYDEIKSPDD QKVEYMKTLR TLEEDAFSYT DSVYDFEERS FDEHEPPIPP LHKTGVFSVP 120
  121 LQPTHTVNSN SDDGYENSSK NEYL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [145-630]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFNSEISASP VNEPMTHSQS YTSIDRLNSS SSHYSKDVPL LCGSLTIDCP TPIDLRGMLG  60
   61 PFMQKNPDEA SFLRYSAITC QPEDMNNNGL QLRTWSTGRD IQIAVCLTLS DEDLASFAIS 120
  121 LSSIMNNLKH LCSRSKSRVW GNESWEKVLV CVVIDGRNTV HQNVLDLLAS IGVYQPHIAK 180
  181 GRVNGKRTLS HMYEFTSTIN VDEKLNLTTA TGDGNVPMQM LLCVKDRRLG TYNSHRWFLN 240
  241 GIASLARPKV CLFVRNGARL GPTSIYHAWK AFDVDSTIGG MCGKTSIDTG KFGFRLLNPF 300
  301 IASQHFDQMI HNNLRLPYDS CMGYISNALN AIYGFRYVAL QDSYPNPGPL ADYFEQDQYE 360
  361 IPRRGILQSN AFLAQEQLLF WKVITRKDAK WHLQYVPEAC ATIEAPNSMA GILESKKSEI 420
  421 NSSFSLAVYV IVDFFSLWTT RHKFFRFLLL TVQSLVFAIE KLVNFFSMAN FFLAFYFVCN 480
  481 ATSYSS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.19
Match:	2d7iA
Description:	No description for 2d7iA was found.

Predicted Domain #3

Region A:
Residues: [631-702]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNPYGNWARP LFLVFEYILI CLIFSQFMLA MGNRPRSCRV LLFISTALFS IIMIYFVFCV  60
   61 FYISLIPLHN SD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [703-770]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSEIVLGNNY FTTLIFSSLL ILACYAFVSL ICMDPFFIFT CIVQYILLMP TRIYTEQIYA  60
   61 LCHLDDAS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [771-836]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISKDDNQQEF NFDTGITHCS MNDEGYTTIS IPKANVLNSV YNSSLKNFSS SNDTSVYHDV  60
   61 QDHCYR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [837-926]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPQSYEDHYQ DIRTRYVLVW AVSNLILAIV LIQVFDGMRF INNGYMKYIF WSIVAFTAWK  60
   61 TMGAVTFIAT KIISRIANCV KSKLYIFNDP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits