YRC Public Data Repository - Protein Structure Prediction

Protein:	chs1
Organism:	Schizosaccharomyces pombe
Length:	859 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for chs1.

Description	E-value	Query Range	Subject Range
CHSC_EMENI - Chitin synthase C OS=Emericella nidulans GN=chsC PE=3 SV=2 gi\|49094484, gi\|... - gi\|67536792\|ref\|XP_662170.1\| hypothetical protein AN4566.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	793.0	[0..14]	[857..70]
gi\|4519181, gi\|7... - pir\|\|A59054 chitin synthase (EC 2.4.1.16) CHS1 - Emericella nidulans, gi\|4519181\|dbj\|BAA75501.1\| ch...	792.0	[0..14]	[857..70]
gi\|83774827, gi\|... - gi\|83774827\|dbj\|BAE64950.1\| unnamed protein product [Aspergillus oryzae], gi\|19071965\|dbj\|BAB85684.1... gi\|169783242 - gi\|169783242\|ref\|XP_001826083.1\| hypothetical protein [Aspergillus oryzae RIB40]	786.0	[0..14]	[858..70]
gi\|90304943, gi\|... - gi\|90304943\|gb\|EAS34574.1\| chitin synthase 1 [Coccidioides immitis RS], gi\|119191101\|ref\|XP_00124615...	786.0	[0..14]	[858..67]
gi\|9082308 - gi\|9082308\|gb\|AAF82801.1\|AF276826_1 class I chitin synthase [Coccidioides posadasii]	783.0	[0..14]	[857..67]
gi\|159128736 - gi\|159128736\|gb\|EDP53850.1\| chitin synthase A [Aspergillus fumigatus A1163] gi\|66846953, gi\|... - gi\|70988943\|ref\|XP_749322.1\| chitin synthase A [Aspergillus fumigatus Af293], gi\|66846953\|gb\|EAL8728...	774.0	[0..14]	[856..49]
gi\|114191799, gi... - gi\|115398654\|ref\|XP_001214916.1\| chitin synthase 2 [Aspergillus terreus NIH2624], gi\|114191799\|gb\|EA...	772.0	[0..14]	[858..72]
CHS2_EXODE - Chitin synthase 2 OS=Exophiala dermatitidis GN=CHS2 PE=3 SV=2	768.0	[0..22]	[859..74]
CHS3_NEUCR - Chitin synthase 3 OS=Neurospora crassa GN=chs-3 PE=3 SV=2 CHS3_NEUCR - Chitin synthase 3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGS...	761.0	[0..22]	[858..50]
gi\|6002698 - gi\|6002698\|gb\|AAF00101.1\|AF127086_1 chitin synthase 3 [Neurospora crassa]	760.0	[0..22]	[858..50]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRWFKKTLP RPPDEEESAG LTNKDIVETN HLYPTITNLS LNSDTSSILF DKNKKPLKPK  60
   61 IIIPDKEFDL DYYLKDETE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [80-527]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIQSPFEGFT AQPNFSNFNK QGNTMNREAN FQRTNEKIQR NKSIKRVKLF HGNLILDCPI  60
   61 PKKLLVTLPQ QTEREFAYMR YSAATCDPQD FSKSLFTLRQ PLFFQPRKTE ICIAITMYNE 120
  121 DEVLFARTMH SVMKNISHLC TRKNSQVWGK DAWKKVVVCI ISDGRTKIHP RTLAYLAAIG 180
  181 VYQDGIAKNQ VNDKEVKAHI YEYTTQLSID PNLKFKGSDR GIVPVQMIFC LKEKNQKKLN 240
  241 SHLWFFQAFC PILKPEVCIL LDAGTRPGDQ SIYHLWKSFD LNPQVAGACG EIVVMKGKLG 300
  301 SGLINPLVAT QNFEYKMSNI LDKPVESVFG FISVLPGAFS AYRFEALQND SQGNGPLASY 360
  361 FKGELQNTGK SGIFEANMYL AEDRILCFEL VSKKNEAWIL HYVKSAYADT DVPDRIPEFV 420
  421 LQRRRWLNGS FFAAAYAICH YYRFFRTS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.46
Match:	2d7iA
Description:	No description for 2d7iA was found.

Predicted Domain #3

Region A:
Residues: [528-605]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HTISRKFMLS IEFIYQLATI VFGWFNIGNF FIIFYILTSS LASTSANFLP GEILFRIAIW  60
   61 IYASLLVTCF VLALGNRP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [606-720]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGSPNFYLSM VIMYSILMGY LLFCSGWIAY RAISDAIHNA SSTSSSYTSA LLNSNVFINI  60
   61 VISLSSTYGM YLVVSIISFD PWHMFTSFVQ YIFLSIMYTN VLNVYAFCNT HDVSW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [721-859]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTKGDHFTNN DLGVARLLQK GADVEIAIPT NQSDIDAKYE DAVKLLASPS LEFNSPIINH  60
   61 GEQEDFYKNF RTYVVLTWIL SNLFLVGIVL SIPKINGISI SNNETSAYLS FLLWSVVAFS 120
  121 VFRFIGCIFY LFIRLCTGE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.421	a.25.1	Ferritin-like
View	Download	0.549	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.316	d.67.3	Ribosome recycling factor, RRF
View	Download	0.329	a.168.1	GEF domain of SopE toxin
View	Download	0.312	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits