YRC Public Data Repository - Protein Structure Prediction

Protein:	cho1
Organism:	Schizosaccharomyces pombe
Length:	221 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cho1.

Description	E-value	Query Range	Subject Range
orf19.7446 - OPI3 CGDID:CAL0005552 Assembly 19, Contig19-2514 (94158, 93481) CDS, reverse complemented, translate... gi\|68479878, gi\|... - gi\|68479878\|ref\|XP_716107.1\| hypothetical protein CaO19.7446 [Candida albicans SC5314], gi\|46437762\|... gi\|238881052 - gi\|238881052\|gb\|EEQ44690.1\| methylene-fatty-acyl-phospholipid synthase [Candida albicans WO-1]	319.0	[0..7]	[215..12]
gi\|56238096, gi\|... - gi\|74227513\|dbj\|BAE21818.1\| unnamed protein product [Mus musculus], gi\|56238096\|emb\|CAI25927.1\| phos...	319.0	[0..24]	[220..41]
gi\|73956258 - gi\|73956258\|ref\|XP_536665.2\| PREDICTED: similar to phosphatidylethanolamine N-methyltransferase isof...	308.0	[0..24]	[220..30]
gi\|33243044, gi\|... - gi\|47523788\|ref\|NP_999530.1\| phosphatidylethanolamine N-methyltransferase [Sus scrofa], gi\|33243044\|...	307.0	[0..24]	[220..4]
gi\|42549798, gi\|... - gi\|46128471\|ref\|XP_388789.1\| hypothetical protein FG08613.1 [Gibberella zeae PH-1], gi\|42549798\|gb\|E...	307.0	[0..23]	[218..10]
PEMT_BOVIN - Phosphatidylethanolamine N-methyltransferase OS=Bos taurus GN=PEMT PE=2 SV=1	305.0	[0..24]	[220..4]
gi\|190409547 - gi\|190409547\|gb\|EDV12812.1\| unsaturated phospholipid N-methyltransferase [Saccharomyces cerevisiae R... gi\|207343828 - gi\|207343828\|gb\|EDZ71167.1\| YJR073Cp-like protein [Saccharomyces cerevisiae AWRI1631] PEM2_YEAST - Phosphatidyl-N-methylethanolamine N-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 20450... OPI3 - Phospholipid methyltransferase (methylene-fatty-acyl-phospholipid synthase), catalyzes the last two ... gi\|151945140 - gi\|151945140\|gb\|EDN63391.1\| unsaturated phospholipid N-methyltransferase [Saccharomyces cerevisiae Y...	301.0	[0..24]	[220..12]
gi\|28279539, gi\|... - gi\|41055853\|ref\|NP_956452.1\| phosphatidylethanolamine N-methyltransferase [Danio rerio], gi\|28279539...	298.0	[0..28]	[215..39]

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Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLILYPKPT SYLYQPFIKA YFSLNMAIFE INNSFLICAV SIALNPLLWN IAARSEYNHK  60
   61 TLTKLANGDS KKACYMLAAC IFVAGIVRDL IYQNALKQQP TLGIFMNPLV QGIAKLIFCF 120
  121 GSVLVLSSMY KLGLVGTYLG DYFGFLLPER VSGFPFNVND NPMYNGSTLC FLSTALRYGK 180
  181 VAGLLLTLEV FFVYRIALKF EEPFTAKIYA ARDSKQAKKS E

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	156.886057
Match:	PF04191.4
Description:	No description for PF04191.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits