YRC Public Data Repository - Protein Structure Prediction

Protein:	cig2
Organism:	Schizosaccharomyces pombe
Length:	411 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cig2.

Description	E-value	Query Range	Subject Range
gi\|7547487, gi\|2... - gi\|7547487\|gb\|AAB29297.2\| B-type cyclin Cig2 [Schizosaccharomyces pombe], gi\|25294191\|pir\|\|T52009 B-...	355.0	[0..1]	[411..1]
gi\|51762951 - gi\|51762951\|ref\|XP_485921.1\| PREDICTED: similar to cyclin B1 isoform 1 [Mus musculus]	316.0	[0..1]	[395..1]
gi\|114599953 - gi\|114599953\|ref\|XP_517728.2\| PREDICTED: cyclin B1 [Pan troglodytes]	316.0	[0..1]	[395..104]
gi\|73999528 - gi\|73999528\|ref\|XP_544149.2\| PREDICTED: similar to G2/mitotic-specific cyclin B1 [Canis familiaris]	313.0	[0..1]	[395..1]
gi\|109077467 - gi\|109077467\|ref\|XP_001091533.1\| PREDICTED: cyclin B1 isoform 4 [Macaca mulatta]	311.0	[0..1]	[395..1]
CCNB1, CGB1 - chorionic gonadotropin, beta polypeptide 1, cyclin B1 gi\|123990181 - gi\|123990181\|gb\|ABM83901.1\| cyclin B1 [synthetic construct]	309.0	[0..1]	[395..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALYSISKPV GSKINKHSYQ DENTLVGKQA LSKGTEKTKL STNFEINLPR RTVLSDVSNV  60
   61 GKNNADEKDT KKAKRSFDES NLSTNEEADK PVESKFVKKL KVYSKNADPS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.215	0.091	conjugation with cellular fusion	c.55.3	Ribonuclease H-like
View	Download	0.517	0.047	conjugation with cellular fusion	a.24.3	Cytochromes
View	Download	0.287	0.017	conjugation with cellular fusion	a.47.2	t-snare proteins
View	Download	0.213	0.002	conjugation with cellular fusion	a.60.10	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
View	Download	0.338	N/A	N/A	d.168.1	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain

Predicted Domain #2

Region A:
Residues: [111-411]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VETLQKDRVS NVDDHLSSNP LMAEEYAPEI FEYIRKLDLK CLPNPKYMDQ QKELTWKMRE  60
   61 ILNEWLVEIH SNFCLMPETL YLAVNIIDRF LSRRSCSLSK FQLTGITALL IASKYEEVMC 120
  121 PSIQNFVYMT DGAFTVEDVC VAERYMLNVL NFDLSYPSPL NFLRKISQAE GYDAQTRTLG 180
  181 KYLTEIYLFD HDLLRYPMSK IAAAAMYLSR RLLRRGPWTP KLVESSGGYE EHELKEIAYI 240
  241 MLHYHNKPLE HKAFFQKYSS KRFLKASIFV HQLVRQRYSV NRTDDDDLQS EPSSSLTNDG 300
  301 H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.0
Match:	2jgzB
Description:	No description for 2jgzB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits