YRC Public Data Repository - Protein Structure Prediction

Protein:	puc1
Organism:	Schizosaccharomyces pombe
Length:	359 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for puc1.

Description	E-value	Query Range	Subject Range
gi\|114599953 - gi\|114599953\|ref\|XP_517728.2\| PREDICTED: cyclin B1 [Pan troglodytes]	296.0	[0..39]	[359..217]
CCNB1_MESAU - G2/mitotic-specific cyclin-B1 OS=Mesocricetus auratus GN=CCNB1 PE=2 SV=1	294.0	[0..3]	[359..74]
gi\|73999528 - gi\|73999528\|ref\|XP_544149.2\| PREDICTED: similar to G2/mitotic-specific cyclin B1 [Canis familiaris]	291.0	[0..7]	[359..53]
gi\|38014678, gi\|... - gi\|38014678\|gb\|AAH60466.1\| MGC68601 protein [Xenopus laevis], gi\|148222908\|ref\|NP_001083368.1\| hypot...	291.0	[0..3]	[359..40]
gi\|60655945 - gi\|60655945\|gb\|AAX32536.1\| cyclin B1 [synthetic construct]	290.0	[0..39]	[359..114]
CCNB1, CGB1 - chorionic gonadotropin, beta polypeptide 1, cyclin B1 gi\|123990181 - gi\|123990181\|gb\|ABM83901.1\| cyclin B1 [synthetic construct]	290.0	[0..39]	[359..114]
gi\|1835260 - gi\|1835260\|emb\|CAA99990.1\| mitotic cyclin [Sesbania rostrata]	289.0	[0..8]	[357..100]
CCNB2_RANJA - G2/mitotic-specific cyclin-B2 OS=Rana japonica GN=CCNB2 PE=2 SV=1	289.0	[0..3]	[359..39]
gi\|109077471 - gi\|109077471\|ref\|XP_001091170.1\| PREDICTED: cyclin B1 isoform 2 [Macaca mulatta]	288.0	[0..40]	[359..114]

Back

Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVSSNEEQL TAHTPTSSSS IEPKILAACS YSLSVGPCSL AVSPKGVNSK SPSLKNETAF  60
   61 VVDSVSTLSA ESSALLYNTQ SSLLTGLSMN G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [92-359]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLGEYQEDII HHLITREKNF LLNVHLSNQQ PELRWSMRPA LVNFIVEIHN GFDLSIDTLP  60
   61 LSISLMDSYV SRRVVYCKHI QLVACVCLWI ASKFHETEDR VPLLQELKLA CKNIYAEDLF 120
  121 IRMERHILDT LDWDISIPTP ASYIPVLDPI FFLVLDASMF VPNLFKFPAS KIACSVMNIV 180
  181 NEHVGSFLLT HPSMESYRKD DNFLWPEDLD TVTSYMENMS KRYANEECTD LLFSSLGRIS 240
  241 SILAKKYPEQ CAMAAWCNMT EKDTERTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.30103
Match:	2jgzB
Description:	No description for 2jgzB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits