YRC Public Data Repository - Protein Structure Prediction

Protein:	cdr1
Organism:	Schizosaccharomyces pombe
Length:	593 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdr1.

Description	E-value	Query Range	Subject Range
gi\|2144420, gi\|4929 - gi\|4929\|emb\|CAA40774.1\| putative protein kinase [Schizosaccharomyces pombe], pir\|\|KIZPMN protein kin...	385.0	[0..1]	[593..1]
gi\|73964121 - gi\|73964121\|ref\|XP_868655.1\| PREDICTED: similar to MAP/microtubule affinity-regulating kinase 3 isof...	352.0	[0..9]	[579..53]
gi\|119602218, gi... - gi\|15042609\|gb\|AAK82367.1\|AF387637_1 Ser/Thr protein kinase PAR-1A [Homo sapiens], gi\|119602218\|gb\|E...	350.0	[0..9]	[579..53]
gi\|114654995 - gi\|114654995\|ref\|XP_001138412.1\| PREDICTED: MAP/microtubule affinity-regulating kinase 3 isoform 13 ...	350.0	[0..9]	[583..41]
gi\|61354596 - gi\|61354596\|gb\|AAX41026.1\| MAP/microtubule affinity-regulating kinase 3 [synthetic construct]	349.0	[0..9]	[583..53]
gi\|117616782 - gi\|117616782\|gb\|ABK42409.1\| Mark3 [synthetic construct] gi\|74205503, gi\|... - gi\|74205503\|dbj\|BAE21056.1\| unnamed protein product [Mus musculus], gi\|251823810\|ref\|NP_067491.2\| MA...	349.0	[0..9]	[579..53]

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Predicted Domain #1

Region A:
Residues: [1-369]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKRHKNTIG VWRLGKTLGT GSTSCVRLAK HAKTGDLAAI KIIPIRYASI GMEILMMRLL  60
   61 RHPNILRLYD VWTDHQHMYL ALEYVPDGEL FHYIRKHGPL SEREAAHYLS QILDAVAHCH 120
  121 RFRFRHRDLK LENILIKVNE QQIKIADFGM ATVEPNDSCL ENYCGSLHYL APEIVSHKPY 180
  181 RGAPADVWSC GVILYSLLSN KLPFGGQNTD VIYNKIRHGA YDLPSSISSA AQDLLHRMLD 240
  241 VNPSTRITIP EVFSHPFLMG CTSLSSMDST TPPTPSLSID EIDPLVVDCM CVLWKKSSSK 300
  301 KVVRRLQQRD DNDEKYVYKV LSEILRDDML KKQRFDENKY LSLYDLIHDN NLFTKASIST 360
  361 TSLVKSNVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.69897
Match:	2qnjA
Description:	No description for 2qnjA was found.

Predicted Domain #2

Region A:
Residues: [370-593]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNSRKSSNFE DELARRVSSP LSALNQMSQS PIPIRVSSDK DYDSYACHEV VSNPSTLDDD  60
   61 YNYMFVCPPE EYTYSTDNVR TDSLDLQSLP TPTLEQLESV PFNRYGYVRI FPSTTLSSTA 120
  121 SGYYTPDSLS TPEPSIDGLT NLDDVQVGGF VQGSGNQNRR PISFPVISNM QPNITNVRSA 180
  181 SAPLCSSPVP SRRYSQYATN ARYTPRKVSS GSVLRKISSF FRKD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits