YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC26H8.12
Organism:	Schizosaccharomyces pombe
Length:	377 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC26H8.12.

Description	E-value	Query Range	Subject Range
gi\|76659811 - gi\|76659811\|ref\|XP_582675.2\| PREDICTED: similar to Cytochrome c-type heme lyase (CCHL) (Holocytochro...	269.0	[0..124]	[370..8]
gi\|190690255, gi... - gi\|190691629\|gb\|ACE87589.1\| holocytochrome c synthase (cytochrome c heme-lyase) protein [synthetic c... HCCS - holocytochrome c synthase	261.0	[0..104]	[370..4]
gi\|148235817, gi... - gi\|27924209\|gb\|AAH45005.1\| Hccs-prov protein [Xenopus laevis], gi\|148235817\|ref\|NP_001080580.1\| holo...	261.0	[0..60]	[370..3]
gi\|74007107 - gi\|74007107\|ref\|XP_537950.2\| PREDICTED: similar to Cytochrome c-type heme lyase (CCHL) (Holocytochro... gi\|29437340 - gi\|29437340\|gb\|AAH49998.1\| Similar to holocytochrome c synthase (cytochrome c heme-lyase) [Mus muscu...	259.0	[0..90]	[370..4]
gi\|220943808 - gi\|220943808\|gb\|ACL84447.1\| Cchl-PA [synthetic construct] FBpp0307185, Cchl-PA - The gene Cytochrome c heme lyase is referred to in FlyBase by the symbol Dmel\Cchl (CG6022, FBgn0038...	259.0	[0..106]	[369..16]
gi\|58380235, gi\|... - gi\|58380235\|ref\|XP_310401.2\| AGAP003843-PA [Anopheles gambiae str. PEST], gi\|55243971\|gb\|EAA06088.2\|... AGAP003843-PA - cytochrome c heme-lyase\|protein_coding\|2R:44296234:44297070:-1\|gene:AGAP003843	259.0	[0..112]	[369..4]
gi\|109129906, gi... - gi\|109129912\|ref\|XP_001094439.1\| PREDICTED: holocytochrome c synthase (cytochrome c heme-lyase) isof...	259.0	[0..104]	[370..4]
gi\|54638717, gi\|... - gi\|54638717\|gb\|EAL28119.1\| GA19303-PA [Drosophila pseudoobscura], gi\|125775537\|ref\|XP_001358976.1\| G...	257.0	[0..119]	[369..29]
gi\|47203792 - gi\|47203792\|emb\|CAG06190.1\| unnamed protein product [Tetraodon nigroviridis]	257.0	[0..140]	[370..4]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSETTTDH PRTGKCPIDH SKFARSNEAN PDAYINGIKK DQQSSSWWNS LWSRNTDVAS  60
   61 EPDVAMLHKK PSTVDTHDHP LANPPPGCPM HKASNENSTG FFSNLFGREK QNSEATPAVQ 120
  121 PPATCPMSNS NQKPAGVSEV LTGVDSKQQS YVPEGCPVAT PKRGWFN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [168-377]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WFGNNDDQKQ EAYEVDKSNM MYKNIPQTAV DDQVVGLETT RTTSSIPKVD GKNWEYPSPQ  60
   61 QMYNAMWRKG YRDSGENVPI MVQVHNFLNE GAWSEIKAWE REAGENTEPK LLRFEGNANK 120
  121 RTPRALWYMM LGRINPNRWG SGEGPFDRHD WYVQRKDNSI VRYVIDYYEA PDSADGKPVF 180
  181 SLDVRPAVDS FESVALRWKH WRAMRQMQQQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits