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View Structure Prediction Details

Protein: cdc16
Organism: Schizosaccharomyces pombe
Length: 299 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdc16.

Description E-value Query
Range
Subject
Range
gi|21593435, gi|... - gi|21593435|gb|AAM65402.1| putative plant adhesion molecule [Arabidopsis thaliana], gi|18396196|ref|...
249.0 [0..4] [281..51]
gi|90657654 - gi|90657654|gb|ABD96952.1| hypothetical protein [Cleome spinosa]
241.0 [0..11] [292..51]
gi|68357830 - gi|68357830|ref|XP_684364.1| PREDICTED: similar to TBC1 domain family, member 10B [Danio rerio]
237.0 [0..6] [299..292]
gi|109093822 - gi|109093822|ref|XP_001108536.1| PREDICTED: similar to TBC1 domain family, member 10A isoform 4 [Mac...
234.0 [0..3] [289..77]
gi|62471452, gi|... - gi|62543537|ref|NP_001015022.1| TBC1 domain family, member 10a [Rattus norvegicus], gi|62471452|gb|A...
234.0 [0..3] [289..77]
gi|49119692 - gi|49119692|gb|AAH72576.1| Tbc1d10b protein [Mus musculus]
233.0 [0..6] [266..172]

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Predicted Domain #1
Region A:
Residues: [1-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSIDCKRLQ KLAPKSPENQ SKCISRLRYM VMLDQVESDE GGNSSTRPYV WAVLLNAPPR  60
   61 NADEYIRYVR QGPSPMAQKI QNDVSRTLVV ESQFHSRVSQ SSLSRLLNAY VWKRGALYVQ 120
  121 GMNVLASPFL YACKSENQAF QFFDRLLQNE CPLYVLPNID GVHRGAKLLD KCLEVLDHRL 180
  181 YTYLLSKGLT AKIYALPSIL TLSACTAPLS EALTIWDFLF AYGIHLNILC VIAQMFIFRE 240
  241 QLIDHPSPMT LLRTFPPLNA KNIMKITILL ISKLPPELYN LLARHAWDSE AGVLIDRLT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.154902
Match: 2qfzA
Description: No description for 2qfzA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle