YRC Public Data Repository - Protein Structure Prediction

Protein:	cdc16
Organism:	Schizosaccharomyces pombe
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdc16.

Description	E-value	Query Range	Subject Range
gi\|21593435, gi\|... - gi\|21593435\|gb\|AAM65402.1\| putative plant adhesion molecule [Arabidopsis thaliana], gi\|18396196\|ref\|...	249.0	[0..4]	[281..51]
gi\|90657654 - gi\|90657654\|gb\|ABD96952.1\| hypothetical protein [Cleome spinosa]	241.0	[0..11]	[292..51]
gi\|68357830 - gi\|68357830\|ref\|XP_684364.1\| PREDICTED: similar to TBC1 domain family, member 10B [Danio rerio]	237.0	[0..6]	[299..292]
gi\|109093822 - gi\|109093822\|ref\|XP_001108536.1\| PREDICTED: similar to TBC1 domain family, member 10A isoform 4 [Mac...	234.0	[0..3]	[289..77]
gi\|62471452, gi\|... - gi\|62543537\|ref\|NP_001015022.1\| TBC1 domain family, member 10a [Rattus norvegicus], gi\|62471452\|gb\|A...	234.0	[0..3]	[289..77]
gi\|49119692 - gi\|49119692\|gb\|AAH72576.1\| Tbc1d10b protein [Mus musculus]	233.0	[0..6]	[266..172]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSIDCKRLQ KLAPKSPENQ SKCISRLRYM VMLDQVESDE GGNSSTRPYV WAVLLNAPPR  60
   61 NADEYIRYVR QGPSPMAQKI QNDVSRTLVV ESQFHSRVSQ SSLSRLLNAY VWKRGALYVQ 120
  121 GMNVLASPFL YACKSENQAF QFFDRLLQNE CPLYVLPNID GVHRGAKLLD KCLEVLDHRL 180
  181 YTYLLSKGLT AKIYALPSIL TLSACTAPLS EALTIWDFLF AYGIHLNILC VIAQMFIFRE 240
  241 QLIDHPSPMT LLRTFPPLNA KNIMKITILL ISKLPPELYN LLARHAWDSE AGVLIDRLT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.154902
Match:	2qfzA
Description:	No description for 2qfzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits