YRC Public Data Repository - Protein Structure Prediction

Protein:	cbp3
Organism:	Schizosaccharomyces pombe
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cbp3.

Description	E-value	Query Range	Subject Range
UQCC1_MOUSE - Ubiquinol-cytochrome-c reductase complex assembly factor 1 OS=Mus musculus GN=Uqcc1 PE=1 SV=1	306.0	[0..45]	[283..58]
gi\|114681645 - gi\|114681645\|ref\|XP_001163593.1\| PREDICTED: similar to CBP3 isoform 6 [Pan troglodytes]	300.0	[0..40]	[283..25]
gi\|109092218 - gi\|109092218\|ref\|XP_001099909.1\| PREDICTED: similar to basic FGF-repressed Zic binding protein isofo...	299.0	[0..50]	[283..66]
UQCC - ubiquinol-cytochrome c reductase complex chaperone	299.0	[0..50]	[283..67]
gi\|73991745 - gi\|73991745\|ref\|XP_851851.1\| PREDICTED: similar to basic FGF-repressed Zic binding protein isoform a...	298.0	[0..10]	[283..24]
gi\|78395043, gi\|... - gi\|78395043\|gb\|AAI07808.1\| Similar to Basic FGF-repressed Zic-binding protein (mbFZb) [Rattus norveg...	297.0	[0..46]	[283..63]

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Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRCCLNLPL RPAFVKQPVW GKSIYGPLRR RFSFSPINVI NHSPSETKRR DPVEELRYKP  60
   61 LTPPQDPRKV APPNSFLKKI SLIYQKYISP KQNLYYEATG TARYMYFEAA RQATPEKNSL 120
  121 GAFEFWYQKC EIPMTFQSWF QITQLHLWIL HTRIRGLPKN EKVAFSQALT TRFFEDMELR 180
  181 IHKDYRINSN RISGMYLKDL FQQQTGAIFG YDQGMLGSDA VLATSVWRNL FVGRPDVDLV 240
  241 ILETIVKFIR LNVYRLSCLS TDDFINGKGV HFVPPEESAQ TNI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	97.657577
Match:	PF03981.3
Description:	No description for PF03981.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits