YRC Public Data Repository - Protein Structure Prediction

Protein:	btf3
Organism:	Schizosaccharomyces pombe
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for btf3.

Description	E-value	Query Range	Subject Range
gi\|89268303 - gi\|89268303\|emb\|CAJ82851.1\| basic transcription factor 3 [Xenopus tropicalis]	247.0	[0..1]	[150..53]
BTF3_MOUSE - Transcription factor BTF3 OS=Mus musculus GN=Btf3 PE=1 SV=3	239.0	[0..1]	[150..48]
gi\|109077564 - gi\|109077564\|ref\|XP_001100404.1\| PREDICTED: basic transcription factor 3 isoform 2 [Macaca mulatta]	235.0	[0..1]	[150..50]
gi\|208965864 - gi\|208965864\|dbj\|BAG72946.1\| basic transcription factor 3 [synthetic construct] BTF3 - basic transcription factor 3 gi\|55624114 - gi\|55624114\|ref\|XP_517710.1\| PREDICTED: basic transcription factor 3 isoform 3 [Pan troglodytes]	234.0	[0..1]	[150..50]
gi\|60652869, gi\|... - gi\|60652871\|gb\|AAX29130.1\| basic transcription factor 3 [synthetic construct], gi\|60652869\|gb\|AAX291...	232.0	[0..1]	[150..6]
gi\|27686915, gi\|... - gi\|56605700\|ref\|NP_001008310.1\| basic transcription factor 3 [Rattus norvegicus], gi\|55154111\|gb\|AAH... gi\|29507, gi\|395... - gi\|395087\|emb\|CAA52200.1\| transcription factor BTF3 [Homo sapiens], gi\|30583079\|gb\|AAP35784.1\| basic... gi\|542159224\|ref... - PREDICTED: transcription factor BTF3 [Zonotrichia albicollis] tr\|U3KMX6\|U3KMX6... - Transcription factor BTF3 OS=Oryctolagus cuniculus GN=BTF3 PE=3 SV=1 gi\|74137908, gi\|... - gi\|74226885\|dbj\|BAE27087.1\| unnamed protein product [Mus musculus], gi\|74151231\|dbj\|BAE27735.1\| unna... gi\|114599709 - gi\|114599709\|ref\|XP_001152428.1\| PREDICTED: similar to general transcription factor isoform 2 [Pan t... gi\|60655957, gi\|... - gi\|60655959\|gb\|AAX32543.1\| basic transcription factor 3 [synthetic construct], gi\|60655957\|gb\|AAX325... gi\|109077568 - gi\|109077568\|ref\|XP_001100502.1\| PREDICTED: basic transcription factor 3 isoform 3 [Macaca mulatta]	231.0	[0..1]	[150..6]
gi\|149726547 - gi\|149726547\|ref\|XP_001504740.1\| PREDICTED: similar to rCG44623 isoform 2 [Equus caballus] gi\|58760394, gi\|... - gi\|70778873\|ref\|NP_001020485.1\| basic transcription factor 3 [Bos taurus], gi\|58760394\|gb\|AAW82107.1...	231.0	[0..1]	[150..6]
gi\|109476985 - gi\|109476985\|ref\|XP_001067412.1\| PREDICTED: similar to basic transcription factor 3-like 4 [Rattus n...	231.0	[0..1]	[150..126]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPSKLAKLQ AGARIGGKGT PRRKVKKPSK SAMSAADDKK VQGALKKLNM QNLAGIQEVN  60
   61 MFKEDGGVIN FRAPTVHSSL PNETTAIYGK AEEKTLSEIL PGILNNLGPE SLTALRQMAE 120
  121 QLKVSEGEKG ADAQADDGEI PDLVEKFDEQ D

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.56
Match:	1tr8A
Description:	Crystal Structure of archaeal Nascent Polypeptide-associated Complex (aeNAC)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits