YRC Public Data Repository - Protein Structure Prediction

Protein:	eca39
Organism:	Schizosaccharomyces pombe
Length:	380 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for eca39.

Description	E-value	Query Range	Subject Range
gi\|2231619 - gi\|2231619\|gb\|AAC39352.1\| branched-chain amino acids aminotransferase [Schizosaccharomyces pombe]	424.0	[0..1]	[380..1]
gi\|37747955, gi\|... - gi\|41152384\|ref\|NP_956358.1\| branched chain aminotransferase 1, cytosolic [Danio rerio], gi\|37747955...	403.0	[0..1]	[378..19]
gi\|46135993, gi\|... - gi\|46135993\|ref\|XP_389688.1\| hypothetical protein FG09512.1 [Gibberella zeae PH-1], gi\|42553458\|gb\|E...	403.0	[0..2]	[378..32]
gi\|50729086 - gi\|50729086\|ref\|XP_416424.1\| PREDICTED: similar to branched chain aminotransferase 1, cytosolic [Gal...	401.0	[0..12]	[378..24]
gi\|73997380 - gi\|73997380\|ref\|XP_543760.2\| PREDICTED: similar to branched chain aminotransferase 1, cytosolic [Can...	400.0	[0..13]	[378..76]
gi\|145013898, gi... - gi\|39968793\|ref\|XP_365787.1\| hypothetical protein MGG_02489 [Magnaporthe grisea 70-15], gb\|EAA54504....	398.0	[0..2]	[377..28]
ILVE_BACSU - Putative branched-chain-amino-acid aminotransferase OS=Bacillus subtilis GN=ywaA PE=1 SV=4 gi\|16080906, gi\|... - gi\|2636390\|emb\|CAB15881.1\| ywaA [Bacillus subtilis subsp. subtilis str. 168], gi\|16080906\|ref\|NP_391...	396.0	[0..13]	[378..1]
gi\|115400795, gi... - gi\|115400795\|ref\|XP_001215986.1\| branched-chain-amino-acid aminotransferase [Aspergillus terreus NIH...	396.0	[0..6]	[377..42]

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Predicted Domain #1

Region A:
Residues: [1-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQTAALHGP KPMDSSHIKV TNVKELKPLP EWKSLKFGEN FTDHMLIMKW NREKGWSTPE  60
   61 IVPFGKLCFH PASSVFHYGF ECFEGMKAFR DEKGVPRLFR PIKNAERMLS TGTRISLPSF 120
  121 DPAELAEIIR KFVAHENRWV PDQRGYSLYI RPTFIGTDEA LGVHHCDNAM LYVIASPVGP 180
  181 YYSSGFKAVK LCCSEESVRA WPGGTGHYKL GGNYAPSVLP QKEAAKKGYA QILWLYGDED 240
  241 YITEVGTMNC FTVWINKNGE KEIITAPLDG MILPGVTRDS ILEICRERLA PKGWKITEGK 300
  301 YSMKEVAQAS KEGRLLEVFG AGTAALVSPV KAINYKGTEY EIPMPEGQEA GPITSEISKW 360
  361 ILDIQYGKEP NNPWSVPALP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	110.0
Match:	2cogA
Description:	Crystal structure of oxidized human cytosolic branched-chain aminotransferase complexed with 4-methylvalerate
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits