YRC Public Data Repository - Protein Structure Prediction

Protein:	atp11
Organism:	Schizosaccharomyces pombe
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp11.

Description	E-value	Query Range	Subject Range
ATP11 - Molecular chaperone, required for the assembly of alpha and beta subunits into the F1 sector of mito... ATP11_YEAST - Protein ATP11, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATP11 PE=1 ...	321.0	[0..3]	[279..20]
gi\|85112030 - gi\|85112030\|ref\|XP_964222.1\| hypothetical protein NCU03296 [Neurospora crassa OR74A] gi\|32420577, gi\|... - gi\|32420577\|ref\|XP_330732.1\| hypothetical protein [Neurospora crassa], gi\|28925994\|gb\|EAA34986.1\| co...	298.0	[0..24]	[283..33]
gi\|38104175, gi\|... - gi\|39945124\|ref\|XP_362099.1\| hypothetical protein MG04544.4 [Magnaporthe grisea 70-15], gb\|EAA50785....	295.0	[0..24]	[279..35]
gi\|46122441, gi\|... - gi\|46122441\|ref\|XP_385774.1\| hypothetical protein FG05598.1 [Gibberella zeae PH-1], gi\|42550930\|gb\|E...	293.0	[0..24]	[279..30]
gi\|67526601, gi\|... - gi\|67526601\|ref\|XP_661362.1\| hypothetical protein AN3758.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	284.0	[0..24]	[270..29]
gi\|149035625, gi... - ref\|XP_233402.2\| similar to ATP synthase mitochondrial F1 complex assembly factor 1 [Rattus norvegic...	273.0	[0..34]	[285..83]
gi\|45187694, gi\|... - gi\|45187694\|ref\|NP_983917.1\| ADL179Cp [Ashbya gossypii ATCC 10895], gi\|44982455\|gb\|AAS51741.1\| ADL17... gi\|44982455 - gi\|44982455\|gb\|AAS51741.1\| ADL179Cp [Ashbya gossypii ATCC 10895]	267.0	[0..43]	[271..37]
gi\|190689449, gi... - gi\|190690811\|gb\|ACE87180.1\| ATP synthase mitochondrial F1 complex assembly factor 1 protein [synthet... gi\|17511865, gi\|... - gi\|48735309\|gb\|AAH71731.1\| ATP synthase mitochondrial F1 complex assembly factor 1 [Homo sapiens], g...	265.0	[0..37]	[285..66]
gi\|58386929, gi\|... - gi\|58386929\|ref\|XP_315167.2\| AGAP004641-PA [Anopheles gambiae str. PEST], gi\|55239510\|gb\|EAA10556.2\|...	264.0	[0..21]	[286..45]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPIWKLPVN HLLCHSFKSI PRTSAYAVRF AHHTSNNDDL EVKKNTVYER YERKLKSKAE  60
   61 ELHMPVTNLL KKGQTKEREH VIPKKSFSAK KSLVGQNAKK S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [102-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLSGLNRYID VEKIKELPTS TIEKLWRARN IGDDILSACI PKEIYEKMLS RARMYPYFVL  60
   61 PLPRGDKGIE SHFLQWNFPN KNEAHLLVTS LLEYKLKGSY AAPHTIMLHF ADLLNLKGIT 120
  121 LMRCQFEPKK LSANDVQLLV LAIQKFYNAS ENTPLGKERL ALLAAFSKGA DFDLHKVATH 180
  181 MDMLE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits