YRC Public Data Repository - Protein Structure Prediction

Protein:	atp5
Organism:	Schizosaccharomyces pombe
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp5.

Description	E-value	Query Range	Subject Range
gi\|7490135 - gi\|7490135\|pir\|\|T41174 ATP synthase delta chain homolog - fission yeast (Schizosaccharomyces pombe)	215.0	[0..1]	[212..1]
gi\|57108786 - gi\|57108786\|ref\|XP_535587.1\| PREDICTED: similar to ATP synthase O subunit, mitochondrial precursor (...	199.0	[0..8]	[214..2]
ATPO_IPOBA - ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1	199.0	[0..7]	[216..29]
gi\|109065448 - gi\|109065448\|ref\|XP_001090216.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F1 complex,...	198.0	[0..17]	[216..10]
ATPO_PIG - ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1	196.0	[0..17]	[214..10]
ATPO_PONPY - ATP synthase subunit O, mitochondrial precursor - Pongo pygmaeus (Orangutan) ATPO_PONAB - ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1	196.0	[0..17]	[215..10]
ATP5O - ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit gi\|55655775 - gi\|55655775\|ref\|XP_531443.1\| PREDICTED: mitochondrial ATP synthase, O subunit [Pan troglodytes]	195.0	[0..8]	[216..2]
gi\|61365630, gi\|... - gi\|61365630\|gb\|AAX42738.1\| ATP synthase H+ transporting mitochondrial F1 complex O subunit [syntheti...	195.0	[0..8]	[216..2]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHIFRRSIP ITARLPSLGI RSLATATASA HPPVQLYGLD GSYASSLYTA AVKESKLDNV  60
   61 EKALNKLSGV LQQRPEFEQY ISSPWLTRED KKILVSSLTQ MTGNEPLLKN FYNVLLDNHR 120
  121 LYLLTRIQKQ FSTLMRAKRG EIEVKITSAT P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.045757
Match:	2bo5A
Description:	Bovine oligomycin sensitivity conferral protein N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [152-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDSKILSRLE SRIAKSKYGK GKLLVSNKVT PSIIGGLIVE IGDNILDVSV GSRLNNLNKL  60
   61 LSEPI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.962
Match:	2dm9A
Description:	No description for 2dm9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits