YRC Public Data Repository - Protein Structure Prediction

Protein:	atp16
Organism:	Schizosaccharomyces pombe
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp16.

Description	E-value	Query Range	Subject Range
gi\|40746994, gi\|... - gi\|67515991\|ref\|XP_657881.1\| hypothetical protein AN0277.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	158.0	[0..2]	[156..9]
ATPE_SOYBN - ATP synthase epsilon chain, chloroplastic OS=Glycine max GN=atpE PE=3 SV=1	146.0	[0..30]	[159..2]
ATPE_MORIN - ATP synthase epsilon chain, chloroplastic OS=Morus indica GN=atpE PE=3 SV=1	144.0	[0..30]	[159..2]
gi\|22796595 - gi\|22796595\|emb\|CAD23901.1\| ATP synthase epsilon subunit [Hydrangea aspera]	144.0	[0..30]	[160..1]
ATPE_NYMAL - ATP synthase epsilon chain, chloroplastic OS=Nymphaea alba GN=atpE PE=3 SV=1	144.0	[0..30]	[159..2]
ATPE_CALFG - ATP synthase epsilon chain, chloroplastic OS=Calycanthus floridus var. glaucus GN=atpE PE=3 SV=1	143.0	[0..30]	[159..2]
gi\|110456644 - gi\|110456644\|gb\|ABG74763.1\| ATPase epsilon subunit [Jasminum leratii]	143.0	[0..30]	[159..2]
ATPE_JASNU - ATP synthase epsilon chain, chloroplastic OS=Jasminum nudiflorum GN=atpE PE=3 SV=1	142.0	[0..30]	[159..2]
gi\|110456681 - gi\|110456681\|gb\|ABG74790.1\| ATPase epsilon subunit [Jasminum abyssinicum]	142.0	[0..30]	[159..2]
gi\|69215466, gi\|... - gi\|85540810\|gb\|ABC70762.1\| ATP synthase CF1 epsilon subunit [Ranunculus macranthus], gi\|69215466\|gb\|...	142.0	[0..30]	[159..2]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRKSQFPQG LVRAPFGIRG YAQAVQKNEK LVLSMALPYQ TIYEKVPVTQ VDIPAEDGEM  60
   61 GILKDHVPMI QCLKPGVISV TDESSNKSKY FISGGFAVQQ PSNELSITVP EAYKLEDFSS 120
  121 SVANQLLEKH KAEMNSSDEG VAAEAAVRVS VLESLVRALK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.154902
Match:	2hldH
Description:	No description for 2hldH was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits