YRC Public Data Repository - Protein Structure Prediction

Protein:	atp2
Organism:	Schizosaccharomyces pombe
Length:	525 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp2.

Description	E-value	Query Range	Subject Range
ATPB_AGAAF - ATP synthase subunit beta, chloroplastic OS=Agapanthus africanus GN=atpB PE=3 SV=1	649.0	[0..44]	[522..10]
gi\|5758870 - gi\|5758870\|gb\|AAD50844.1\| ATP synthase beta subunit [Cyanastrum cordifolium]	646.0	[0..44]	[524..10]
ATPB_IPOCC - ATP synthase subunit beta, chloroplastic OS=Ipomoea coccinea GN=atpB PE=3 SV=1	644.0	[0..47]	[519..13]
gi\|61968281 - gi\|61968281\|gb\|AAX57067.1\| ATP synthase beta subunit [Petalodiscus fadenii]	644.0	[0..47]	[520..1]
gi\|22651724 - gi\|22651724\|gb\|AAM26934.1\| ATP synthase beta subunit [Aldrovanda vesiculosa]	643.0	[0..47]	[520..10]
gi\|7708676 - gi\|7708676\|emb\|CAB90016.1\| ATP synthase beta subunit [Thunbergia coccinea]	643.0	[0..47]	[515..11]
gi\|22651730 - gi\|22651730\|gb\|AAM26937.1\| ATP synthase beta subunit [Drosera regia]	643.0	[0..48]	[524..12]
gi\|21684905 - gi\|21684905\|emb\|CAD11579.1\| ATP synthase beta subunit [Rostkovia magellanica]	643.0	[0..43]	[522..9]
gi\|21684903 - gi\|21684903\|emb\|CAD11578.1\| ATP synthase beta subunit [Marsippospermum grandiflorum]	641.0	[0..43]	[522..3]
gi\|16943670 - gi\|16943670\|emb\|CAD10763.1\| atp synthase, beta subunit [Dianella ensifolia]	639.0	[0..44]	[524..10]

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Predicted Domain #1

Region A:
Residues: [1-525]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKQALSGI RRFSLATKQS FVKTSYKLPR KSWLNTAKFN TIRYASTEAA KHNKGSIKQV  60
   61 IGAVVDCQFE DADSLPSILN ALEVKLPDNK RLVLEVAQHV GENTVRTIAM DGTEGLVRGT 120
  121 AVIDTGSPIS IPVGPGTLGR IMNVIGEPVD ERGPIKAVKY SPIHADAPSF EEQSTTPEIL 180
  181 ETGIKVVDLL APYARGGKIG LFGGAGVGKT VFIQELINNI AKAHGGYSVF TGVGERTREG 240
  241 NDLYREMQET GVIKLEGESK AALVFGQMNE PPGARARVAL TGLTVAEYFR DIEGQDVLLF 300
  301 IDNIFRFTQA GSEVSALLGR IPSAVGYQPT LATDMGAMQE RITTTKKGSI TSVQAVYVPA 360
  361 DDLTDPAPAT TFAHLDATTV LSRSISELGI YPAVDPLDSK SRMMDPRILG EEHYNLAGSV 420
  421 QQMLQEYKSL QDIIAILGMD ELSEADKLTV ERARKVQRFL SQPFAVAEVF TGIEGRLVSL 480
  481 KDTIRSFKEI LEGKHDSLPE SAFYMVGSID DAVKKAEKIA QELAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	179.0
Match:	2qe7D
Description:	No description for 2qe7D was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits