YRC Public Data Repository - Protein Structure Prediction

Protein:	atp1
Organism:	Schizosaccharomyces pombe
Length:	536 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp1.

Description	E-value	Query Range	Subject Range
gi\|116325975, gi... - gi\|116325975\|ref\|NP_001070823.1\| ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subu...	670.0	[0..1]	[536..14]
gi\|109122095 - gi\|109122095\|ref\|XP_001089681.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F1 complex,...	669.0	[0..1]	[536..45]
ATPA_CARHZ - ATP synthase subunit alpha OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-...	666.0	[0..29]	[536..1]
gi\|238483087, gi... - gi\|238483087\|ref\|XP_002372782.1\| mitochondrial F1 ATPase subunit alpha, putative [Aspergillus flavus... gi\|83765516 - gi\|83765516\|dbj\|BAE55659.1\| unnamed protein product [Aspergillus oryzae] gi\|169766380 - gi\|169766380\|ref\|XP_001817661.1\| hypothetical protein [Aspergillus oryzae RIB40]	665.0	[0..5]	[536..24]
ATPA_RAT - ATP synthase subunit alpha, mitochondrial OS=Rattus norvegicus GN=Atp5a1 PE=1 SV=2	665.0	[0..1]	[536..14]
gi\|47207317 - gi\|47207317\|emb\|CAF96443.1\| unnamed protein product [Tetraodon nigroviridis]	664.0	[0..1]	[536..14]
gi\|119188523, gi... - gi\|90303654\|gb\|EAS33285.1\| hypothetical protein CIMG_04309 [Coccidioides immitis RS], gi\|119188523\|r...	664.0	[0..4]	[536..11]
ATPA_MOUSE - ATP synthase subunit alpha, mitochondrial OS=Mus musculus GN=Atp5a1 PE=1 SV=1	663.0	[0..6]	[536..21]
ATPA_PONAB - ATP synthase subunit alpha, mitochondrial OS=Pongo abelii GN=ATP5A1 PE=2 SV=1 ATPA_PONPY - ATP synthase subunit alpha, mitochondrial precursor - Pongo pygmaeus (Orangutan)	663.0	[0..1]	[536..14]

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Predicted Domain #1

Region A:
Residues: [1-536]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRQAGTRLL KVPVCGLRPS ITLKRGYAEK AAPTEVPSIL EERIRGAYNQ AQMMESGRVL  60
   61 SIGDGIARIS GLSNVQAEEL VEFSSGIKGM ALNLEADTVG CVLFGNDRLV REGEVVKRTR 120
  121 HIVDVPVGEA LLGRVVDALG NPIDGKGPIK TTERRRVQLK APGILPRTSV CEPMQTGLKA 180
  181 IDSMVPIGRG QRELIIGDRQ TGKTAIALDT ILNHKRWNNS SDESKKLYCV YVAVGQKRST 240
  241 VAQLVQKLEE NDSLKYSIIV AATASESAPL QYLAPFSGCA MGEWFRDNGK HGLVVYDDLS 300
  301 KQAVAYRQMS LLLRRPPGRE AYPGDVFYLH SRLLERAAKM SPKHGGGSLT ALPVIETQGG 360
  361 DVSAYIPTNV ISITDGQIFL ESELFFKGIR PAINVGLSVS RVGSAAQVKA MKQVAGQIKL 420
  421 FLAQYREVAS FAQFGSDLDA GTRATLDRGL RLTELLKQPQ YSPLAVEEQV PLIYCGVKGY 480
  481 LDKIPVDRVV EFEHKFIPYL RSSGAEIMEA IRKEGVLSKT TEDSLKAVIK EFLSSF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2v7qA
Description:	No description for 2v7qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits