YRC Public Data Repository - Protein Structure Prediction

Protein:	atp9
Organism:	Schizosaccharomyces pombe
Length:	74 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp9.

Description	E-value	Query Range	Subject Range
gi\|114581903 - gi\|114581903\|ref\|XP_525965.2\| PREDICTED: similar to mitochondrial ATP synthase subunit 9 precursor [...	121.0	[0..4]	[73..211]
gi\|74004280 - gi\|74004280\|ref\|XP_545452.2\| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial F0 c...	120.0	[0..4]	[73..323]
gi\|50750427 - gi\|50750427\|ref\|XP_426577.1\| PREDICTED: similar to Cg1746-prov protein [Gallus gallus]	107.0	[0..4]	[73..259]
gi\|38104104, gi\|... - gi\|39944994\|ref\|XP_362034.1\| hypothetical protein MG04479.4 [Magnaporthe grisea 70-15], gb\|EAA50720....	104.0	[0..9]	[71..89]
gi\|109096967 - gi\|109096967\|ref\|XP_001107007.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex,...	104.0	[0..4]	[73..128]
gi\|85794840, gi\|... - gi\|85794840\|ref\|NP_005167.2\| ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 iso... gi\|114644458 - gi\|114644458\|ref\|XP_509102.2\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex, su...	102.0	[0..4]	[73..128]
AT5G2_BOVIN - ATP synthase F(0) complex subunit C2, mitochondrial OS=Bos taurus GN=ATP5G2 PE=1 SV=1	101.0	[0..4]	[73..73]
AT5G2_SHEEP - ATP synthase F(0) complex subunit C2, mitochondrial OS=Ovis aries GN=ATP5G2 PE=2 SV=1	101.0	[0..4]	[73..73]
AT5G2_MOUSE - ATP synthase F(0) complex subunit C2, mitochondrial OS=Mus musculus GN=Atp5g2 PE=2 SV=2	100.0	[0..4]	[73..76]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQAAKYIGA GLATIGVSGA GVGIGLIFSN LISGTSRNPS VRPHLFSMAI LGFALTEATG  60
   61 LFCLMLAFLI IYAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.0
Match:	1yceA
Description:	Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits