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View Structure Prediction Details

Protein: atf21
Organism: Schizosaccharomyces pombe
Length: 355 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atf21.

Description E-value Query
Range
Subject
Range
gi|114581857 - gi|114581857|ref|XP_001152057.1| PREDICTED: chimerin (chimaerin) 1 isoform 6 [Pan troglodytes]
133.0 [0..12] [346..131]
gi|94368111 - gi|94368111|ref|XP_995106.1| PREDICTED: similar to nucleoporin 214kDa isoform 6 [Mus musculus]
102.0 [0..3] [350..431]
gi|3511287, gi|7... - pir||T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...
97.0 [0..10] [208..1486]
AP1_CHICK - (P18870) Transcription factor AP-1 (Proto-oncogene c-jun)
94.0 [0..47] [338..11]
gi|32401139 - gi|32401139|gb|AAP80764.1| unknown [Trypanosoma cruzi]
94.0 [0..4] [194..671]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFANVYLGL DTLGNEGYGA SVSNGTHHDF HFNFNTFRDG GNHEVGEKRA ESSDIGVYEC  60
   61 RGPVQGPKDQ TSFPSNSHNN YASIVGDASI GHYLKGPERT SEVSLPQTVN LSEISNNNDK 120
  121 GQPTNTPPVR STIVAPSLYS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [141-246]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGSTLNHYNN GSHQVLHPQF QNGTNAPYVV QSNLMQNNVN LTGAEQEKGL DLYKNSATAN  60
   61 NDEIFYNLES LRREGYLNSN KKQSQSPNGD YNSSDESCSN KTVASS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [247-355]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRRGTPGSNN VHTASNNETP DMKRRRFLER NRIAASKCRQ KKKLWTQNLE KTAHIACEQS  60
   61 KALRILVSQL REEVICLKNQ LLAHQDCNCE GIRQYLSSEA QGIMSFQKH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.39794
Match: 2i1jA
Description: No description for 2i1jA was found.

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Created and Maintained by: Michael Riffle