YRC Public Data Repository - Protein Structure Prediction

Protein:	atp18
Organism:	Schizosaccharomyces pombe
Length:	60 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp18.

Description	E-value	Query Range	Subject Range
gi\|32416642, gi\|... - gi\|32416642\|ref\|XP_328799.1\| predicted protein [Neurospora crassa], gi\|28927029\|gb\|EAA35988.1\| predi... gi\|85068464 - gi\|85068464\|ref\|XP_965224.1\| hypothetical protein NCU08093 [Neurospora crassa OR74A]	95.0	[0..1]	[60..1]
gi\|190408162 - gi\|190408162\|gb\|EDV11427.1\| ATP synthase associated protein [Saccharomyces cerevisiae RM11-1a] ATP18_YEAST - ATP synthase subunit J, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AT... ATP18 - Subunit of the mitochondrial F1F0 ATP synthase, which is a large enzyme complex required for ATP syn... gi\|151946082 - gi\|151946082\|gb\|EDN64313.1\| ATP synthase [Saccharomyces cerevisiae YJM789]	90.0	[0..6]	[59..2]
gi\|49078674, gi\|... - gi\|71022737\|ref\|XP_761598.1\| hypothetical protein UM05451.1 [Ustilago maydis 521], ref\|XP_403066.1\| ...	89.0	[0..1]	[60..1]
gi\|45190767, gi\|... - gi\|45190767\|ref\|NP_985021.1\| AER163Wp [Ashbya gossypii ATCC 10895], gi\|44983809\|gb\|AAS52845.1\| AER16... gi\|44983809 - gi\|44983809\|gb\|AAS52845.1\| AER163Wp [Ashbya gossypii ATCC 10895]	87.0	[0..6]	[56..2]
gi\|46135829, gi\|... - gi\|46135829\|ref\|XP_389606.1\| hypothetical protein FG09430.1 [Gibberella zeae PH-1], gi\|42554579\|gb\|E...	85.0	[0..1]	[57..1]
gi\|49640860\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|50303573, gi\|... - gi\|50303573\|ref\|XP_451728.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640860\|emb\|CAH0212...	81.0	[0..6]	[56..2]
gi\|149209685, gi... - gi\|86196280\|gb\|EAQ70918.1\| hypothetical protein MGCH7_ch7g325 [Magnaporthe grisea 70-15], gi\|3997027...	78.0	[0..6]	[50..15]
gi\|169595174, gi... - gi\|169595174\|ref\|XP_001791011.1\| hypothetical protein SNOG_00321 [Phaeosphaeria nodorum SN15], gi\|11...	76.0	[0..1]	[60..1]
gi\|49652953 - gi\|49652953\|emb\|CAG85289.1\| DEHA2B07568p [Debaryomyces hansenii] gi\|49652953, gi\|... - gi\|50413597\|ref\|XP_457288.1\| hypothetical protein DEHA0B07601g [Debaryomyces hansenii CBS767], gi\|49...	69.0	[0..8]	[59..4]
gi\|240105097 - gi\|240105097\|gb\|EER23290.1\| ATP synthase j chain family protein [Coccidioides posadasii C735 delta S... gi\|119194935, gi... - gi\|90306857\|gb\|EAS36488.1\| hypothetical protein CIMG_01842 [Coccidioides immitis RS], gi\|119194935\|r...	68.0	[0..4]	[52..3]

Back

Predicted Domain #1

Region A:
Residues: [1-60]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFGLKRYS TPILKPMLPF FLGGAIVFYG TVKLRDAMMD SAEYRNDPRN PKAGKYGSDH  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.283997
Match:	PF04911.3
Description:	No description for PF04911.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits