YRC Public Data Repository - Protein Structure Prediction

Protein:	arg1
Organism:	Schizosaccharomyces pombe
Length:	441 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for arg1.

Description	E-value	Query Range	Subject Range
ARGD_METJA - Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii GN=argD PE=3 SV=1 ARGD_METJA - Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JA...	358.0	[0..37]	[441..4]
gi\|110601528, gi... - gi\|222054221\|ref\|YP_002536583.1\| acetylornithine and succinylornithine aminotransferase [Geobacter s...	357.0	[0..36]	[439..3]
ARGD_THETN - Acetylornithine aminotransferase OS=Thermoanaerobacter tengcongensis GN=argD PE=3 SV=1 ARGD_CALS4 - Acetylornithine aminotransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 1...	356.0	[0..43]	[440..5]
gi\|88917343, gi\|... - gi\|88935900\|ref\|ZP_01141523.1\| Acetylornithine and succinylornithine aminotransferase [Geobacter ura...	354.0	[0..36]	[439..3]
gi\|134298152, gi... - gi\|88944090\|ref\|ZP_01147423.1\| Acetylornithine and succinylornithine aminotransferase [Desulfotomacu...	353.0	[0..36]	[436..3]
gi\|95135406, gi\|... - gi\|95928616\|ref\|ZP_01311363.1\| acetylornithine and succinylornithine aminotransferases [Desulfuromon...	351.0	[0..34]	[441..2]
gi\|78221428, gi\|... - gi\|78221428\|ref\|YP_383175.1\| acetylornithine aminotransferase [Geobacter metallireducens GS-15], gi\|...	349.0	[0..35]	[441..2]
gi\|84488867, gi\|... - gi\|84488867\|ref\|YP_447099.1\| acetylornithine aminotransferase [Methanosphaera stadtmanae DSM 3091], ...	348.0	[0..36]	[436..3]
gi\|241883989, gi... - gi\|241903682\|ref\|ZP_04788402.1\| acetylornithine and succinylornithine aminotransferase [Thermoanaero... gi\|76588469, gi\|... - gi\|76796199\|ref\|ZP_00778566.1\| Acetylornithine and succinylornithine aminotransferase [Thermoanaerob...	344.0	[0..42]	[439..5]
gi\|118581574, gi... - gi\|71837414\|ref\|ZP_00677179.1\| Acetylornithine and succinylornithine aminotransferase [Pelobacter pr...	343.0	[0..36]	[440..3]

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Predicted Domain #1

Region A:
Residues: [1-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQRRSLLSV RSSGSQIAFR RFVSLTHKDP TPDTTSCNII KKEGANIISV YARYPVVAAK  60
   61 GEGSYLFDKE GRKYIDFTSG VAVTSLGHAH PEVARLAADQ CSKLVHSSNL FYNEPAIELS 120
  121 NVINNSLAKN SGIAGPTKIF FANCGTEANE TALKFARKAA FEKYGEGKSQ IVYFNNSFHG 180
  181 RSLGSLSITA NPKYKRGFQP LLPDVVQAVY NDPASIEQFV NDKTAAVIVE PVQGEGGICP 240
  241 AKPEFLIALR KACDKVGASL IYDEIQCGLG RSGDLWAHSI VKDVASPDII TVAKPLANGL 300
  301 PIGATIVSSK IAAEIHPGEH GSTFGGNPVA CRVGTFCVNE LGSSKILQNV RKQHKALTSR 360
  361 FDDFVAKYPN LIRGYAGRGL LLGLQFTEPP AKFIELARQQ GLLLLPGGNN NTRVLPSLNV 420
  421 KDEVIAKGLD IMESTLKALS K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.522879
Match:	2eh6A
Description:	No description for 2eh6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits