YRC Public Data Repository - Protein Structure Prediction

Protein:	arc2
Organism:	Schizosaccharomyces pombe
Length:	317 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for arc2.

Description	E-value	Query Range	Subject Range
gi\|145021369, gi... - gi\|39945526\|ref\|XP_362300.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA50986....	506.0	[0..1]	[315..1]
gi\|74195800 - gi\|74195800\|dbj\|BAE30463.1\| unnamed protein product [Mus musculus]	500.0	[0..1]	[315..84]
gi\|40746556, gi\|... - gi\|67516049\|ref\|XP_657910.1\| hypothetical protein AN0306.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	494.0	[0..1]	[315..1]
gi\|66847649, gi\|... - gi\|70990336\|ref\|XP_750017.1\| ARP2/3 complex 34 kDa subunit [Aspergillus fumigatus Af293], gi\|668476... gi\|159130497 - gi\|159130497\|gb\|EDP55610.1\| ARP2/3 complex 34 kDa subunit , putative [Aspergillus fumigatus A1163]	490.0	[0..1]	[315..1]
gi\|114193571, gi... - gi\|115396726\|ref\|XP_001214002.1\| ARP2/3 complex 34 kDa subunit [Aspergillus terreus NIH2624], gi\|114...	485.0	[0..1]	[315..1]
gi\|47220979 - gi\|47220979\|emb\|CAF98208.1\| unnamed protein product [Tetraodon nigroviridis]	485.0	[0..1]	[316..1]
ARPC2_BOVIN - Actin-related protein 2/3 complex subunit 2 OS=Bos taurus GN=ARPC2 PE=1 SV=1	485.0	[0..1]	[315..1]
gi\|114583279 - gi\|114583279\|ref\|XP_001154791.1\| PREDICTED: actin related protein 2/3 complex subunit 2 isoform 2 [P...	484.0	[0..1]	[314..1]
gi\|46125353, gi\|... - gi\|46125353\|ref\|XP_387230.1\| hypothetical protein FG07054.1 [Gibberella zeae PH-1], gi\|42553258\|gb\|E...	484.0	[0..1]	[315..1]

Back

Predicted Domain #1

Region A:
Residues: [1-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLDYNNIF IYELLTERFS SENPSSIDQV VTDFDGVTFH ISTPEEKTKI LISLSMKCYP  60
   61 ELVNYGTLDL LKQIYGAYVH EPEMGYNFSI LIDLQQLPAT DEEKEQLAMS ISMLKRNVLA 120
  121 APFHRAFTKQ AELADLARKD PENAPMLDKQ ATSQELMAIH YRDEETIVLW PEHDRVTVVF 180
  181 STKFREETDR IFGKVFLQEF VDARRRPAIQ TAPQVLFSYR DPPLEIRDIQ GIQKGDDFGF 240
  241 VTFVLFERHF TPQNREDCIS HIQVFRNTLH FHIKASKAYM HQRMRKRVAD FQKVLNRAKP 300
  301 DVELERKTAT GRSFVRA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	137.0
Match:	1k8kD
Description:	ARPC2 (34 kDa subunit)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
actin binding	6.0922573068519	bayes_pls_golite062009
actin filament binding	5.01990273175321	bayes_pls_golite062009
cytoskeletal protein binding	4.64781612293343	bayes_pls_golite062009
binding	2.16088008530271	bayes_pls_golite062009
protein binding	1.98253629760139	bayes_pls_golite062009
structural molecule activity	1.40122171600941	bayes_pls_golite062009
structural constituent of cytoskeleton	1.37010524302636	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: