YRC Public Data Repository - Protein Structure Prediction

Protein:	arc15
Organism:	Schizosaccharomyces pombe
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for arc15.

Description	E-value	Query Range	Subject Range
ARP5L_RAT - Actin-related protein 2/3 complex subunit 5-like protein OS=Rattus norvegicus GN=Arpc5l PE=1 SV=2	221.0	[0..3]	[152..10]
gi\|542156622\|ref... - PREDICTED: actin-related protein 2/3 complex subunit 5 isoform X1 [Zonotrichia albicollis] gi\|71896007, gi\|... - gi\|71896007\|ref\|NP_001026732.1\| actin related protein 2/3 complex subunit 5 [Gallus gallus], gi\|5312...	218.0	[0..3]	[152..11]
gi\|149243065, gi... - gi\|56966198\|pdb\|1U2V\|G Chain G, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND Calcium, gi\|56...	218.0	[0..3]	[152..11]
ARPC5_MOUSE - Actin-related protein 2/3 complex subunit 5 OS=Mus musculus GN=Arpc5 PE=1 SV=3 tr\|M3WMY0\|M3WMY0... - Actin-related protein 2/3 complex subunit 5 OS=Felis catus GN=ARPC5 PE=3 SV=1 CCDS1357.1_1 - null tr\|G3MXC8\|G3MXC8... - Isoform of Q3SYX9, Actin-related protein 2/3 complex subunit 5 OS=Bos taurus GN=ARPC5 PE=1 SV=1 gi\|67970491 - gi\|67970491\|dbj\|BAE01588.1\| unnamed protein product [Macaca fascicularis]	218.0	[0..3]	[152..11]
gi\|195562237, gi... - gi\|197251940\|ref\|NP_001127829.1\| actin related protein 2/3 complex, subunit 5, 16kDa [Sus scrofa], g... ARPC5 - actin related protein 2/3 complex, subunit 5, 16kDa ARPC5_PONPY - Actin-related protein 2/3 complex subunit 5 - Pongo pygmaeus (Orangutan) gi\|55588898 - gi\|55588898\|ref\|XP_514050.1\| PREDICTED: hypothetical protein XP_514050 [Pan troglodytes] ARPC5_PONAB - Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii GN=ARPC5 PE=2 SV=3 gi\|157170272 - gi\|157170272\|gb\|AAI52790.1\| Actin related protein 2/3 complex, subunit 5, 16kDa [synthetic construct... ARPC5_RAT - Actin-related protein 2/3 complex subunit 5 OS=Rattus norvegicus GN=Arpc5 PE=1 SV=3	217.0	[0..3]	[152..11]
gi\|29437214, gi\|... - gi\|55962329\|emb\|CAI11660.1\| actin related protein 2/3 complex, subunit 5B [Danio rerio], gi\|41393173...	214.0	[0..3]	[152..10]
gi\|55632307 - gi\|55632307\|ref\|XP_520252.1\| PREDICTED: similar to Actin related protein 2/3 complex, subunit 5-like...	214.0	[0..3]	[152..118]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFRTLDVDS ITEPVLTEQD IFPIRNETAE QVQAAVSQLI PQARSAIQTG NALQGLKTLL  60
   61 SYVPYGNDVQ EVRTQYLNAF VDVLSNIRAA DIPAFVKECS TEEIDNIVNF IYRGLANPQA 120
  121 YNSSVLLNWH EKVVEISGIG CIVRVLNSRP DL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.30103
Match:	1k8kG
Description:	Arp2/3 complex 16 kDa subunit ARPC5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
actin binding	4.05206194993572	bayes_pls_golite062009
cytoskeletal protein binding	2.8232927372914	bayes_pls_golite062009
binding	2.61919369153094	bayes_pls_golite062009
structural constituent of cytoskeleton	1.81816151576197	bayes_pls_golite062009
structural molecule activity	1.11205059538724	bayes_pls_golite062009
protein binding	0.604512822275397	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: