YRC Public Data Repository - Protein Structure Prediction

Protein:	fma1
Organism:	Schizosaccharomyces pombe
Length:	379 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fma1.

Description	E-value	Query Range	Subject Range
gi\|40743190, gi\|... - gi\|67538058\|ref\|XP_662803.1\| hypothetical protein AN5199.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	399.0	[0..1]	[378..1]
gi\|114193802, gi... - gi\|115390747\|ref\|XP_001212878.1\| methionine aminopeptidase 1 [Aspergillus terreus NIH2624], gi\|11419...	387.0	[0..1]	[378..1]
gi\|109075163 - gi\|109075163\|ref\|XP_001099172.1\| PREDICTED: methionyl aminopeptidase 1 [Macaca mulatta]	384.0	[0..1]	[370..79]
gi\|70991555, gi\|... - gi\|70991555\|ref\|XP_750626.1\| methionine aminopeptidase, type I [Aspergillus fumigatus Af293], gi\|668... gi\|159124185 - gi\|159124185\|gb\|EDP49303.1\| methionine aminopeptidase, type I, putative [Aspergillus fumigatus A1163...	382.0	[0..1]	[378..1]
MAP1_CHICK - Methionine aminopeptidase 1 OS=Gallus gallus GN=METAP1 PE=2 SV=1	381.0	[0..1]	[370..1]
gi\|83766332 - gi\|83766332\|dbj\|BAE56475.1\| unnamed protein product [Aspergillus oryzae] gi\|169768012 - gi\|169768012\|ref\|XP_001818477.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|220701765, gi... - gi\|238484953\|ref\|XP_002373715.1\| methionine aminopeptidase, putative [Aspergillus flavus NRRL3357], ...	381.0	[0..1]	[378..1]
gi\|577315 - gi\|577315\|dbj\|BAA07679.1\| KIAA0094 [Homo sapiens]	379.0	[0..1]	[370..9]
gi\|55728325 - gi\|55728325\|emb\|CAH90907.1\| hypothetical protein [Pongo abelii] gi\|114595277 - gi\|114595277\|ref\|XP_517355.2\| PREDICTED: methionyl aminopeptidase 1 isoform 7 [Pan troglodytes] MAP1_PONAB - Methionine aminopeptidase 1 OS=Pongo abelii GN=METAP1 PE=2 SV=1	377.0	[0..1]	[370..1]
MAP1_BOVIN - Methionine aminopeptidase 1 OS=Bos taurus GN=METAP1 PE=2 SV=1	377.0	[0..1]	[370..1]

Back

Predicted Domain #1

Region A:
Residues: [1-57]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEIAKHIC CGIDCNNEAD RLQCPKCLND GVKSYFCGQE CFRNSWNIHK HLHRPPN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.537	N/A	N/A	c.47.1	Thioredoxin-like
View	Download	0.719	0.003	methionyl aminopeptidase activity	d.68.3	SirA-like
View	Download	0.510	N/A	N/A	c.47.1	Thioredoxin-like
View	Download	0.450	N/A	N/A	c.47.1	Thioredoxin-like
View	Download	0.416	N/A	N/A	d.68.6	DNA-binding protein Sso10b (AlbA)

Predicted Domain #2

Region A:
Residues: [58-379]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEKREDGTYN PFPKFHFAGS LKPVYPLSPI RKVPPHIKRP DYAKTGVSRS EQIEGRSFKL  60
   61 KRLTPKEQEG MRKVCRLGRE VLDAAAAAVR PGTTTDELDS IVHNACIERD CFPSTLNYYA 120
  121 FPKSVCTSVN EIICHGIPDQ RPLEDGDIVN IDVSLYHNGF HGDLNETYYV GDKAKANPDL 180
  181 VCLVENTRIA LDKAIAAVKP GVLFQEFGNI IEKHTNSITE KQISVVRTYC GHGINQLFHC 240
  241 SPSIPHYSHN KAPGIARPGM TFTIEPMLTL GPARDITWPD DWTSSTASGR CSAQFEHTLL 300
  301 VTETGCEVLT ARLPNSPGGP LK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.69897
Match:	2b3hA
Description:	Crystal structure of Human Methionine Aminopeptidase Type I with a third cobalt in the active site
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits