YRC Public Data Repository - Protein Structure Prediction

Protein:	abp2
Organism:	Schizosaccharomyces pombe
Length:	527 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for abp2.

Description	E-value	Query Range	Subject Range
gi\|1724085 - gi\|1724085\|gb\|AAC49930.1\| ARS binding protein 2 [Schizosaccharomyces pombe]	1035.0	[0..1]	[527..1]
gi\|32404400, gi\|... - gi\|32404400\|ref\|XP_322813.1\| hypothetical protein [Neurospora crassa], gi\|28917166\|gb\|EAA26882.1\| pr... gi\|85078153 - gi\|85078153\|ref\|XP_956118.1\| hypothetical protein NCU03555 [Neurospora crassa OR74A]	242.0	[0..12]	[152..129]
gi\|38105197, gi\|... - gi\|39942336\|ref\|XP_360705.1\| hypothetical protein MG03248.4 [Magnaporthe grisea 70-15], gb\|EAA51653....	240.0	[0..7]	[152..39]
gi\|67516117, gi\|... - gi\|67516117\|ref\|XP_657944.1\| hypothetical protein AN0340.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	237.0	[0..7]	[152..109]
gi\|66847609, gi\|... - gi\|70990256\|ref\|XP_749977.1\| ARS binding protein Abp2 [Aspergillus fumigatus Af293], gi\|66847609\|gb\|... gi\|159130458 - gi\|159130458\|gb\|EDP55571.1\| ARS binding protein Abp2, putative [Aspergillus fumigatus A1163]	232.0	[0..7]	[152..116]
gi\|88179521, gi\|... - gi\|88179521\|gb\|EAQ86989.1\| hypothetical protein CHGG_08242 [Chaetomium globosum CBS 148.51], gi\|1162...	218.0	[0..7]	[152..21]
gi\|114193614, gi... - gi\|115396812\|ref\|XP_001214045.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	207.0	[0..7]	[152..116]
gi\|119182479, gi... - gi\|90301154\|gb\|EAS30785.1\| hypothetical protein CIMG_06264 [Coccidioides immitis RS], gi\|119182479\|r...	196.0	[0..7]	[152..87]
gi\|111069654 - gi\|111069654\|gb\|EAT90774.1\| hypothetical protein SNOG_01125 [Phaeosphaeria nodorum SN15]	177.0	[0..8]	[152..106]
gi\|42547579, gi\|... - gi\|46107892\|ref\|XP_381005.1\| hypothetical protein FG00829.1 [Gibberella zeae PH-1], gi\|42547579\|gb\|E...	144.0	[0..7]	[221..45]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFYSLLPSR HDVSADNITE KFCQFCLCCN PWYAGADTRQ LANAFNMIPK SEGQKFEIWV  60
   61 LFLLVRQYHQ KIINSWSKLV GFLGVERKDE QSTQKIQQYV VRLKRWMSQT HVDAFFDYLL 120
  121 NKPNPYYLEI PETQPQVRCN VNVTDDLVIK SLRAGLMSH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [160-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDVNSSSIST MRTSTSPSNW IHSASASLDD NTHNLGSFVT NPHADSQECP TPQSLLMRAS  60
   61 HHMSERGSQQ AHQTTPQNHS LPHPPNMFEP PDEDHQLPSA AN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [262-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSHNHDHAFQ TAEAVGVADS IDPDWHQWPD DLRDVSSPKE SDGLNDSWSR QTNQVETENV  60
   61 ENEAGVPRKR GRP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [335-527]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGARNKIKRL RSEPSVSLTL SISWYERFEK LMHAQNTMLR SAFSHVARLP METVSQLLSH  60
   61 YTETISQYLP PSETSPIPKT PNFKFISSTL LALVSSHSEI LEASTDRLIW TVHQGPLTAT 120
  121 ICHAFNLEKA PSMHSLAEAQ MIPDVPISHS NSMEPLDTVS SLKLEIAKLN AALKEKNLEL 180
  181 ENLKRKIMNA VFD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits