YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC16C4.10
Organism:	Schizosaccharomyces pombe
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC16C4.10.

Description	E-value	Query Range	Subject Range
gi\|50747027 - gi\|50747027\|ref\|XP_420726.1\| PREDICTED: similar to glucosamine-6-phosphate deaminase 2; glucosamine-...	262.0	[0..1]	[255..1]
gi\|62089394 - gi\|62089394\|dbj\|BAD93141.1\| glucosamine-6-phosphate deaminase 2 variant [Homo sapiens]	261.0	[0..1]	[255..36]
gi\|114593868 - gi\|114593868\|ref\|XP_001143245.1\| PREDICTED: similar to glucosamine-6-phosphate deaminase 2 variant [...	261.0	[0..1]	[255..124]
GNPI1_PONAB - Glucosamine-6-phosphate isomerase 1 OS=Pongo abelii GN=GNPDA1 PE=2 SV=1 GNPI_PONPY - Glucosamine-6-phosphate isomerase - Pongo pygmaeus (Orangutan)	259.0	[0..1]	[255..1]
gi\|71019455, gi\|... - gi\|71019455\|ref\|XP_759958.1\| hypothetical protein UM03811.1 [Ustilago maydis 521], ref\|XP_401426.1\| ...	259.0	[0..3]	[254..18]
gi\|73974964 - gi\|73974964\|ref\|XP_849417.1\| PREDICTED: similar to glucosamine-6-phosphate deaminase 2 isoform 1 [Ca...	258.0	[0..1]	[255..1]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVYSFSDVS LVAKALGAFV KEKSEASIKR HGVFTLALSG GSLPKVLAEG LAQQRGIEFS  60
   61 KWEVFFADER IVPLDDENSN YALCKKLIFD KFEGFDPKKI HTINPELLKE NPIDPQNVAD 120
  121 EYEKQLVHVF ANSSTVKVPV FDLLLLGCGP DGHTCSLFPD HEVLQEDVAW VAPVTDSPKP 180
  181 PKDRITLTLP VVTHAQAIAF VTTGAGKKDI LPIVIEDFTS KLPSALITRN NLTRTSWFVD 240
  241 DEASANLERS SLKVFPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.69897
Match:	1y89A
Description:	Crystal Structure of devB protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits