YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC660.16
Organism:	Schizosaccharomyces pombe
Length:	492 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC660.16.

Description	E-value	Query Range	Subject Range
gi\|90306168, gi\|... - gi\|90306168\|gb\|EAS35799.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Coccidioides immitis R...	531.0	[0..1]	[491..1]
gi\|182889876, gi... - gi\|47087439\|ref\|NP_998618.1\| phosphogluconate dehydrogenase isoform 1 [Danio rerio], gi\|28422294\|gb\|...	528.0	[0..2]	[492..27]
gi\|28564155 - gi\|28564155\|gb\|AAO32456.1\| GND1 [Saccharomyces servazzii]	528.0	[0..1]	[492..1]
gi\|11251352, gi\|... - gi\|1749530\|dbj\|BAA13823.1\| unnamed protein product [Schizosaccharomyces pombe], gi\|11251352\|pir\|\|T42...	527.0	[0..1]	[492..17]
gi\|7431252, gi\|6... - pir\|\|JE0234 phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44) - Ascidia sydneiensis sam...	526.0	[0..1]	[492..1]
gi\|57529439, gi\|... - gi\|57529439\|ref\|NP_001006303.1\| phosphogluconate dehydrogenase [Gallus gallus], gi\|53134115\|emb\|CAG3...	524.0	[0..4]	[491..1]
gi\|89949882, gi\|... - gi\|90020282\|ref\|YP_526109.1\| 6-phosphogluconate dehydrogenase [Saccharophagus degradans 2-40], gi\|89...	522.0	[0..9]	[491..7]
gi\|46445951, gi\|... - gi\|46445951\|ref\|YP_007316.1\| 6-phosphogluconate dehydrogenase [Candidatus Protochlamydia amoebophila...	522.0	[0..4]	[492..3]

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Predicted Domain #1

Region A:
Residues: [1-492]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKEVADFG LIGLAVMGQN LILNGADKGF TVCCYNRTTS RVDEFLANEA KGKSIVGAHS  60
   61 LEEFVSKLKK PRVCILLVKA GKPVDYLIEG LAPLLEKGDI IVDGGNSHYP DTTRRCEELA 120
  121 KKGILFVGSG VSGGEEGARY GPSLMPGGNP AAWPRIKPIF QTLAAKAGNN EPCCDWVGEQ 180
  181 GAGHYVKMVH NGIEYGDMQL ICETYDIMKR GLGMSCDEIA DVFEKWNTGK LDSFLIEITR 240
  241 DVLRYKADDG KPLVEKILDA AGQKGTGKWT AQNALEMGTP VSLITEAVFA RCLSSLKSER 300
  301 VRASKKLTGP NTKFTGDKKQ LIDDLEDALY ASKIISYAQG FMLMREAAKE YGWKLNNAGI 360
  361 ALMWRGGCII RSVFLKDITE AFREDPNLES ILFHPFFTNG VEKAQAGWRR VVAQAAMLGI 420
  421 PVPATSTGLS FYDGYRSAVL PANLLQAQRD YFGAHTFRVL PEAADKSLPA DKDIHINWTG 480
  481 HGGNISATTY DA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	144.0
Match:	2p4qA
Description:	No description for 2p4qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits