YRC Public Data Repository - Protein Structure Prediction

Protein:	paa1
Organism:	Schizosaccharomyces pombe
Length:	590 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for paa1.

Description	E-value	Query Range	Subject Range
gi\|1235752, gi\|1... - gi\|1235752\|dbj\|BAA09946.1\| protein phosphotase 2A 65kD regulatory sububit (A subunit) [Schizosacchar...	310.0	[0..1]	[590..1]
2AAB_RAT - Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Rattus norvegicu...	301.0	[0..2]	[589..14]
gi\|1076389, gi\|6... - gi\|683502\|emb\|CAA57528.1\| protein phosphatase 2A 65 kDa regulatory subunit [Arabidopsis thaliana], p...	301.0	[0..7]	[590..5]
gi\|1568511, gi\|7... - pir\|\|T03684 phosphoprotein phosphatase (EC 3.1.3.16) 2A regulatory chain - common tobacco, gi\|156851...	301.0	[0..7]	[590..5]
gi\|11094367 - gi\|11094367\|gb\|AAG29594.1\|AF196287_1 Ser/Thr specific protein phosphatase 2A A regulatory subunit be...	300.0	[0..7]	[585..5]
gi\|115389478, gi... - gi\|115389478\|ref\|XP_001212244.1\| protein phosphatase PP2A regulatory subunit A [Aspergillus terreus ...	300.0	[0..1]	[584..1]
2AAB_PIG - Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus s... gi\|108376 - pir\|\|D34541 phosphoprotein phosphatase (EC 3.1.3.16) 2A-beta 65K regulatory chain - pig (fragment)	299.0	[0..2]	[589..15]

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Predicted Domain #1

Region A:
Residues: [1-590]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTENQVNDL YPIAVLIDEL KHDEITYRLN ALERLSTIAL ALGPERTRDE LIPFLDESID  60
   61 DEDEVLSALA DQLGNFVDYV GGPEYAHVLL SPLENLAATE ETVVRDKAVD SLNKVCICLS 120
  121 QEQLEQYFVP LVQRLSTAEW FTSRASSAGL YCAAYSQSEN PAVKVSLRQS FSHLCHDEAP 180
  181 MVRRPAATNC AKFVFLVTKQ EAIDEFIPLF NSLSNDDQDS VRLLSFDIMV SLAEVLKSDS 240
  241 EIRHYLLQPL RSFVSDSSWR TRYMVAANFV KLAKVVGPSL IKDELIKPFV LLMKDTEQEV 300
  301 RRAIATQIPG FCELLDKRIV LEEIIPVIQE LINDPAQHVR AALGMNIGAL APQLGKEKTT 360
  361 EYLLPMFLEL LKDENPEVRL NIISKLEVVN KVVGIELLSQ SLLPAIVTLA EDKQWRVRLA 420
  421 IIDYIPLLAQ QLGVEFFNEK MGNLCMSWLE DHVYSIREAA IKNLRKLTEI FGLEWATETI 480
  481 IPKFLAMRSH PNYLYRMTTI FAISEIAPAL NAEVIEKQIL PTLEQLVNDP IPNIRFNVAK 540
  541 AFEVLKPVLA AGGDSTVYEQ QIIPLLEQLT KDNDPDVQYF ATQALEQTND

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.0
Match:	2iaeA
Description:	No description for 2iaeA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits