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View Structure Prediction Details

Protein: Pbprp2-PA, Pbprp2-PB
Organism: Drosophila melanogaster
Length: 150 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Pbprp2-PA, Pbprp2-PB.

Description E-value Query
Range
Subject
Range
gi|5081571 - gi|5081571|gb|AAD39447.1|AF133635_1 pheromone binding protein [Ostrinia nubilalis]
130.0 [0..7] [147..5]
gi|5081561 - gi|5081561|gb|AAD39442.1|AF133630_1 pheromone binding protein [Ostrinia furnacalis]
128.0 [0..7] [147..5]
PBP_BOMMO - Pheromone-binding protein OS=Bombyx mori PE=1 SV=2
125.0 [0..1] [147..1]
PBP_MANSE - Pheromone-binding protein OS=Manduca sexta PE=1 SV=1
118.0 [0..6] [147..10]

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Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHLVHLTVL LLVGILCLGA TSAKPHEEIN RDHAAELANE CKAETGATDE DVEQLMSHDL  60
   61 PERHEAKCLR ACVMKKLQIM DESGKLNKEH AIELVKVMSK HDAEKEDAPA EVVAKCEAIE 120
  121 TPEDHCDAAF AYEECIYEQM KEHGLELEEH 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.30103
Match: 1dqeA
Description: Pheromone binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
odorant binding 6.54639467875661 bayes_pls_golite062009
pheromone binding 4.60846885062367 bayes_pls_golite062009
phenylalkylamine binding 3.4460817037949 bayes_pls_golite062009
binding 1.84061726818261 bayes_pls_golite062009
phthalate binding 1.03711589967254 bayes_pls_golite062009
diphenyl phthalate binding 1.03711589967254 bayes_pls_golite062009
dibutyl phthalate binding 1.03711589967254 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle