YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0309320, Obp...
Organism:	Drosophila melanogaster
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309320, Obp....

Description	E-value	Query Range	Subject Range
gi\|24643507, gi\|... - gi\|24643507\|ref\|NP_728340.1\| Odorant-binding protein 19c CG15457-PB, isoform B [Drosophila melanogas...	156.0	[0..1]	[175..1]
gi\|27414033 - gi\|27414033\|gb\|AAO12083.1\| odorant-binding protein AgamOBP17 [Anopheles gambiae]	117.0	[0..10]	[173..1]
gi\|55240329, gi\|... - gi\|58385779\|ref\|XP_314202.2\| ENSANGP00000014514 [Anopheles gambiae str. PEST], gi\|55240329\|gb\|EAA096...	114.0	[0..10]	[173..1]
gi\|37778927, gi\|... - gi\|37778927\|gb\|AAO74643.1\| odorant-binding protein 1 [Aedes aegypti], gi\|157123243\|ref\|XP_001660077....	112.0	[0..27]	[169..1]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPSTPVAAI PLMTIVVAVL LQTHCVRGQT QAFDLAKLLP KTGTEPIWAV IDRNLPQVQE  60
   61 LVTAARMECI QKLQLPRDQR PLGKVTNPSE KEKCLVECVL KKIKLMDADN KLNVGQVEKL 120
  121 TSLVTQDNKM AIAVSSSMAQ ACSRGISSKN PCEVAHLFNQ CISRQLERNN VKLVW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.221849
Match:	2erbA
Description:	AgamOBP1, and odorant binding protein from Anopheles gambiae complexed with PEG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits