YRC Public Data Repository - Protein Structure Prediction

Protein:	Obp19a-PA
Organism:	Drosophila melanogaster
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Obp19a-PA.

Description	E-value	Query Range	Subject Range
FBpp0311428 - type=protein; loc=3R:complement(1798020..1798037,1798092..1798348,1798776..1798851,1798931..1799104)...	135.0	[0..1]	[158..21]
gi\|145651318, gi... - gi\|32135155\|emb\|CAD99000.1\| olfactory specific F protein [Drosophila simulans], gi\|195568613\|ref\|XP_... gi\|39840703 - gi\|39840703\|emb\|CAD91563.1\| Olfactory Specific F protein [Drosophila mauritiana] gi\|195502156, gi... - gi\|195502156\|ref\|XP_002098099.1\| GE24126 [Drosophila yakuba], gi\|194184200\|gb\|EDW97811.1\| GE24126 [D... gi\|194133525, gi... - gi\|195343851\|ref\|XP_002038504.1\| GM10580 [Drosophila sechellia], gi\|194133525\|gb\|EDW55041.1\| GM10580...	133.0	[0..1]	[158..1]
gi\|37778927, gi\|... - gi\|37778927\|gb\|AAO74643.1\| odorant-binding protein 1 [Aedes aegypti], gi\|157123243\|ref\|XP_001660077....	132.0	[0..10]	[158..1]
gi\|39840707, gi\|... - gi\|39840707\|emb\|CAE00444.1\| Olfactory Specific F [Drosophila erecta], gi\|194898937\|ref\|XP_001979019....	130.0	[0..1]	[158..1]
gi\|31208609, gi\|... - gi\|31208609\|ref\|XP_313271.1\| odorant binding protein, antennal (AGAP003530-PA) [Anopheles gambiae st... gi\|27414037 - gi\|27414037\|gb\|AAO12085.1\| odorant-binding protein AgamOBP6 [Anopheles gambiae]	130.0	[0..10]	[159..8]
gi\|167865986, gi... - gi\|19224143\|gb\|AAL86413.1\|AF468212_1 odorant-binding protein precursor [Culex pipiens quinquefasciat...	130.0	[0..17]	[158..14]
gi\|19071282 - gi\|19071282\|gb\|AAL84184.1\|AF437889_1 odorant binding protein [Anopheles gambiae]	128.0	[0..10]	[159..8]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLESGIRQI VSEMKFHLLL VCVAISLGPI PQSEAGVTEE QMWSAGKLMR DVCLPKYPKV  60
   61 SVEVADNIRN GDIPNSKDTN CYINCILEMM QAIKKGKFQL ESTLKQMDIM LPDSYKDEYR 120
  121 KGINLCKDST VGLKNAPNCD PAHALLSCLK NNIKVFVFP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.30103
Match:	2erbA
Description:	AgamOBP1, and odorant binding protein from Anopheles gambiae complexed with PEG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits