YRC Public Data Repository - Protein Structure Prediction

Protein:	skpE-PA
Organism:	Drosophila melanogaster
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for skpE-PA.

Description	E-value	Query Range	Subject Range
gi\|73948993 - gi\|73948993\|ref\|XP_535176.2\| PREDICTED: similar to S-phase kinase-associated protein 1A isoform b [C...	245.0	[0..4]	[164..83]
gi\|114601681, gi... - gi\|114601685\|ref\|XP_001166324.1\| PREDICTED: similar to OCP-II protein isoform 8 [Pan troglodytes], g...	237.0	[0..4]	[164..13]
gi\|74177667 - gi\|74177667\|dbj\|BAE38934.1\| unnamed protein product [Mus musculus]	237.0	[0..4]	[164..2]
gi\|221221226, gi... - gi\|221221806\|gb\|ACM09564.1\| S-phase kinase-associated protein 1 [Salmo salar], gi\|221221226\|gb\|ACM09... gi\|225704136, gi... - gi\|225704136\|gb\|ACO07914.1\| S-phase kinase-associated protein 1A [Oncorhynchus mykiss], gi\|225703580... SKP1_RAT - S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=1 SV=3 gi\|229367476 - gi\|229367476\|gb\|ACQ58718.1\| S-phase kinase-associated protein 1 [Anoplopoma fimbria] SKP1_MOUSE - S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3	236.0	[0..4]	[164..2]
gi\|157120870, gi... - gi\|157120870\|ref\|XP_001653701.1\| skp1 [Aedes aegypti], gi\|157120868\|ref\|XP_001653700.1\| skp1 [Aedes ... gi\|167870384, gi... - gi\|170048269\|ref\|XP_001851731.1\| S-phase kinase-associated protein 1A [Culex quinquefasciatus], gi\|1...	235.0	[0..4]	[164..2]
ENSCJAT00000026490 - null gi\|542149390\|ref... - PREDICTED: S-phase kinase-associated protein 1 [Zonotrichia albicollis] tr\|G3H2C9\|G3H2C9... - S-phase kinase-associated protein 1 OS=Cricetulus griseus GN=I79_004338 PE=4 SV=1 SKP1_MACFA - S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1 gi\|167774211, gi... - gi\|190689545\|gb\|ACE86547.1\| S-phase kinase-associated protein 1 protein [synthetic construct], gi\|16... gi\|89267388, gi\|... - gi\|89267388\|emb\|CAJ83056.1\| S-phase kinase-associated protein 1A (p19A) [Xenopus tropicalis], gi\|628... gi\|224068094 - gi\|224068094\|ref\|XP_002189695.1\| PREDICTED: S-phase kinase-associated protein 1 [Taeniopygia guttata... gi\|149726363 - gi\|149726363\|ref\|XP_001504454.1\| PREDICTED: similar to S-phase kinase-associated protein 1 isoform 1... gi\|114601691, gi... - gi\|114601691\|ref\|XP_001166355.1\| PREDICTED: similar to OCP-II protein isoform 9 [Pan troglodytes], g... SKP1_PONAB - S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1 tr\|M3XD48\|M3XD48... - S-phase kinase associated protein 1 OS=Felis catus GN=SKP1 PE=3 SV=1 gi\|126290083 - gi\|126290083\|ref\|XP_001365828.1\| PREDICTED: similar to S-phase kinase-associated protein 1A (p19A), ... gi\|221307461, gi... - gi\|221307461\|ref\|NP_001138250.1\| S-phase kinase-associated protein 1 [Ovis aries], gi\|187475966\|gb\|A... SKP1_BOVIN - S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1 SKP1_CAVPO - S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2 SKP1_PONPY - S-phase kinase-associated protein 1A - Pongo pygmaeus (Orangutan) SKP1_CHICK - S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1 SKP1 - S-phase kinase-associated protein 1 SKP1_XENLA - S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3 CCDS4171.1_1 - null tr\|G1TTU6\|G1TTU6... - pep:novel chromosome:oryCun2:3:16978329:16990936:-1 gene:ENSOCUG00000022505 transcript:ENSOCUT000000...	234.0	[0..4]	[164..2]
gi\|55731584\|emb\|... - hypothetical protein [Pongo pygmaeus] gi\|55731584 - gi\|55731584\|emb\|CAH92499.1\| hypothetical protein [Pongo abelii]	234.0	[0..4]	[164..2]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTPTIKLES SEGVIFPTEV RVAMVSETIK TMLDHFAVQN DENAIVPLHS VSTFTLGKIL  60
   61 AWANHHKDDD DQSTEGEELK PRRPYAISPW DAIFLMVNST TLLEIILAAK QLQIKGLLEL 120
  121 TYNVVANMIR GKTPEEIRFI FNIPEDVSPS VDGELRWKDL FLWPMDF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.045757
Match:	2e31B
Description:	No description for 2e31B was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits