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View Structure Prediction Details

Protein: out-PA, FBpp0310712
Organism: Drosophila melanogaster
Length: 655 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for out-PA, FBpp0310712.

Description E-value Query
Range
Subject
Range
gi|125982005, gi... - gi|54643318|gb|EAL32062.1| GA20797 [Drosophila pseudoobscura pseudoobscura], gi|125982005|ref|XP_001...
gi|54643318|gb|E... - GA20797-PA [Drosophila pseudoobscura], GA20797 [Drosophila pseudoobscura pseudoobscura]
324.0 [0..1] [655..1]

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Predicted Domain #1
Region A:
Residues: [1-303]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSSLTEKN HTQVYNDTTK PKKPKRRDKS DLGPDFVAPD GGWGWVVCLA AGLNNFFLFP  60
   61 ALQQYGLIYR VRMQSLGFDA KQTTTIVNVV MAISSLVGIV NGAMFRRFTF RQVALTGTSL 120
  121 AFLGVFLSAF CTTFWQYIIC LSAIFGIGLG LAMAATSLAV NTYFKLKRRR ATGFSWTITG 180
  181 LGPIFFPQVS TVLLGYYGAQ GTILIYAGIA MNAILCALTL QPVLWHVKKP EKPVHNTIEG 240
  241 IAETEKLQPE LLEANGNLLS PSNDPWKDYE CKYCQYQKRS KRGLFSSQYL FNVDDPERPG 300
  301 YEI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.221849
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [304-443]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEPGTPMLAR ANDGWFGSKL SLTSESAGGA RSRTRQALMR QVSSRSRENL DRLEQNRHDQ  60
   61 GPDTPSAAAL YKPNYFNRER EDLDRYASKT SVYSRPGQDE LLRCTCAEDK ALLQKTAESL 120
  121 QVNLFNNSAD NTEAEEEAKR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [444-655]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RMTFFQKVSK FFDLDLLRDF TFVNLAVGMS IMMFGEMNFS VLTPFILNSF GYTDTQISLV  60
   61 MSLLACMDIS VRFLAPLALE KVKLDNRVLF AFGILCIAVG RVVVAFTDSY EIMIGVFLLI 120
  121 GFGKAFRTIF SPLIIPSYVP LNRLPAASGL QLIFNTIFSF AMGPILGILT EAYGYAATIH 180
  181 TINALTLLAL LLWLAESVVR RILGIPSKGL GQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.69897
Match: 1pv6A
Description: Crystal structure of lactose permease
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle