YRC Public Data Repository - Protein Structure Prediction

Protein:	Rad51D-PA
Organism:	Drosophila melanogaster
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rad51D-PA.

Description	E-value	Query Range	Subject Range
gi\|114197176, gi... - gi\|115491377\|ref\|XP_001210316.1\| DNA repair protein RAD51 [Aspergillus terreus NIH2624], gi\|11419717...	223.0	[0..2]	[250..106]
gi\|83774056 - gi\|83774056\|dbj\|BAE64181.1\| unnamed protein product [Aspergillus oryzae] gi\|220693763, gi... - gi\|238498508\|ref\|XP_002380489.1\| DNA repair protein RAD51, putative [Aspergillus flavus NRRL3357], g... gi\|169781702 - gi\|169781702\|ref\|XP_001825314.1\| hypothetical protein [Aspergillus oryzae RIB40]	222.0	[0..2]	[250..106]
gi\|159131162 - gi\|159131162\|gb\|EDP56275.1\| DNA repair protein RAD51, putative [Aspergillus fumigatus A1163] gi\|70995295, gi\|... - gi\|70995295\|ref\|XP_752407.1\| DNA repair protein RAD51 [Aspergillus fumigatus Af293], gi\|66850042\|gb\|...	222.0	[0..2]	[250..106]
gi\|1816461 - gi\|1816461\|emb\|CAB02454.1\| uvsC [Emericella nidulans]	222.0	[0..2]	[250..106]
gi\|9904315 - gi\|9904315\|gb\|AAB39323.2\| ARECA [Aspergillus nidulans] gi\|49086692, gi\|... - gi\|67521554\|ref\|XP_658841.1\| hypothetical protein AN1237.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	221.0	[0..2]	[250..102]
gi\|68485285, gi\|... - gi\|68485358\|ref\|XP_713440.1\| hypothetical protein CaO19.3752 [Candida albicans SC5314], gi\|68485285\|... gi\|238879694 - gi\|238879694\|gb\|EEQ43332.1\| DNA repair protein RAD51 [Candida albicans WO-1] orf19.11236, orf... - RAD51 CGDID:CAL0001214 Assembly 19, Contig19-10190 (65480, 66565) CDS, translated using codon table ...	220.0	[0..2]	[249..122]
gi\|111380646 - gi\|111380646\|gb\|ABH09700.1\| RAD51-like protein [Penicillium marneffei] gi\|210066471, gi... - gi\|212542819\|ref\|XP_002151564.1\| DNA repair protein RAD51, putative [Penicillium marneffei ATCC 1822...	219.0	[0..2]	[250..107]
gi\|18182001 - gi\|18182001\|dbj\|BAB83908.1\| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix]	217.0	[0..2]	[249..89]
gi\|2133318, gi\|3... - gi\|32422997\|ref\|XP_331940.1\| hypothetical protein ( Rad51 homolog mei-3 - Neurospora crassa ), gi\|28... gi\|85116816 - gi\|85116816\|ref\|XP_965126.1\| DNA repair protein RAD51 [Neurospora crassa OR74A]	217.0	[0..2]	[250..109]
gi\|7328532 - gi\|7328532\|dbj\|BAA92869.1\| Pprad51 [Penicillium paxilli]	217.0	[0..2]	[249..106]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSHQLHFAV FGSCGFEADT LVEISGPGNS GKSLVLQQLV AHCLVPYKFG GRQWSVLLIN  60
   61 LSHKINRESL AKSIRMELKA YSVGEVIAAK CPTEEQLAEI AGECMSRVRF LNCFANDDVS 120
  121 TSLIDARYAI INDPGIQLVA MDTLSEFYWL DEPKIAKRMS MYRHYRLLQA RLEKLCKDAI 180
  181 VCGMYTVESA FLENRFGENL PEAGIKYHVR MQKIQNQILL NGLPLSFSNG IHLDTNTSKE 240
  241 ITEALLTQPS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.30103
Match:	2bkeA
Description:	Conformational Flexibility Revealed by the Crystal Structure of a Crenarchaeal RadA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits