| Protein: | betaCop-PA |
| Organism: | Drosophila melanogaster |
| Length: | 964 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for betaCop-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
809.0 | [0..6] | [964..4] |
|
Region A: Residues: [1-585] |
1 11 21 31 41 51
| | | | | |
1 MTSQVPCYTI INSPDLEVTN EMQLKRDLEK GDTNVKIETL KRVIKLLLNG ERYPGLIMTI 60
61 IRFVLPVQNH TIKKLLLIFW EIVPKTSADG KLLQEMILVC DAYRKDLQHP NEFLRGSTLR 120
121 FLCKLKEPEL LEPLMPAIRA CLDHRHSYVR RNAVLAIFTI YKNFDWLVPD GPELIASFLD 180
181 TQQDMSCKRN AFLMLLHADQ ERALNYLASC IDQVHTFGDI LQLVIVELIY KVCHANPAER 240
241 SRFIRCIYNL LNSSSNAVRY ESAGTLITLS LAPTAIKAAA SCYIELVVKE SDNNVKLIVL 300
301 DRLVAMKEHE GMEKVMQDLV MDVLRVLAAP DIEVRRKTLA LALDLVYSRN IGEMVLVLKK 360
361 EVAKTHNVEH EDTGKYRQLL VRTLHTCSIK FPDVAANVIP VLVEFLSDTN ELAAADVLIF 420
421 IREAIQKFPA LRALIIEHLI EAFPQIKSSK IHRAAVWILG EYVEGSQILE VIAVIQQTLG 480
481 EVPMVEAEQR RLAGDQTEEQ KQQQGSAGGN AAGSAAEGSG SGNASNKVTS DGTYATQSAY 540
541 SLAPVAKAEK RPPLRQYLMD GDFFIGAALS ATLTKLALRY AELET
|
| Detection Method: |  |
| Confidence: | 93.30103 |
| Match: | 1w63B |
| Description: | AP1 clathrin adaptor core |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [586-964] |
1 11 21 31 41 51
| | | | | |
1 EARAQNRLTT QVMLIMSSIL HLGKSGFPSK PITNDDTDRI FVCLRTLSER TPEAISVFTL 60
61 YCREALGKML DAQHDEDQRM LKEKQKATAK VQPDDPVLFA QLSNGRDNQL GENVFESSLN 120
121 QALAGSKNAQ LSDVASPNSK LNKVTQLTGF SDPVYAEAYV NVNQYDIVLD VLIVNQTNDT 180
181 LQNCTLELAT LGDLKLVERP HPVVLAPHDF CNIKANVKVS STENGIIFGN IVYETALNTN 240
241 VVVLNTIHID IMDYIIPASC TDTEFRQMWQ DFEWENKVTV NTSFTDLHEY LKHLLKSTNM 300
301 KCLTPEKALS GQCGFMAANM YAKSIFGENA LANLSIEKPV DDPDSKVTGH IRIRAKSQGM 360
361 ALSLGDKISS SQKQSVQAA
|
| Detection Method: | |
| Confidence: | 29.0 |
| Match: | 1pzdA |
| Description: | Structural Identification of a conserved appendage domain in the carboxyl-terminus of the COPI gamma-subunit. |
Matching Structure (courtesy of the PDB): |
|
