YRC Public Data Repository - Protein Structure Prediction

Protein:	CG6762-PA
Organism:	Drosophila melanogaster
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG6762-PA.

Description	E-value	Query Range	Subject Range
gi\|54643494\|gb\|E... - GA19844-PA [Drosophila pseudoobscura], GA19844 [Drosophila pseudoobscura pseudoobscura] gi\|125982831, gi... - gi\|54643494\|gb\|EAL32238.1\| GA19844 [Drosophila pseudoobscura pseudoobscura], gi\|125982831\|ref\|XP_001...	203.0	[0..1]	[162..1]
gi\|15030144 - gi\|15030144\|gb\|AAH11325.1\| Sulfiredoxin 1 homolog (S. cerevisiae) [Mus musculus]	190.0	[0..54]	[158..31]
gi\|55650568 - gi\|55650568\|ref\|XP_525238.1\| PREDICTED: similar to SRXN1 protein [Pan troglodytes]	190.0	[0..54]	[158..32]
gi\|109092543 - gi\|109092543\|ref\|XP_001112394.1\| PREDICTED: similar to sulfiredoxin 1 homolog [Macaca mulatta]	187.0	[0..54]	[158..32]
SRXN1 - sulfiredoxin 1 homolog (S. cerevisiae) HGNC:16132\|Ensem... - 1 homolog (S. cerevisiae) gi\|117646504, gi... - gi\|117646504\|emb\|CAL38719.1\| hypothetical protein [synthetic construct], gi\|117645104\|emb\|CAL38018.1...	187.0	[0..54]	[158..32]
gi\|76672594 - gi\|76672594\|ref\|XP_610105.2\| PREDICTED: similar to sulfiredoxin 1 homolog, partial [Bos taurus]	180.0	[0..54]	[158..77]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFISHFLRA TSRRTAALGP ILQRNRSEII QKQSLTNRQA FRRYRSSCST MDTTVHSAGI  60
   61 DETHLVPMSV IQRPIPSVLD EQKVQSLMET IKNETSEDEV PPIDLLWISG SEGGDYYFSF 120
  121 GGCHRFEAYK RLQRPTIKAK LVKSTLGDLY HYMGSSAPKY LA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	1yzsA
Description:	Solution structure of human sulfiredoxin (srx)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA binding	2.28767419294285	bayes_pls_golite062009
binding	2.22126358531565	bayes_pls_golite062009
nucleic acid binding	1.30626987701529	bayes_pls_golite062009
protein binding	0.753434614974221	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: