| Protein: | xmas-2-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1370 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for xmas-2-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
791.0 | [0..13] | [1231..436] |
|
Region A: Residues: [1-121] |
1 11 21 31 41 51
| | | | | |
1 MAEPRPGGYN YKTLLCRNIP ELFLDKYVAR SHFGRFGTLV NFVLRPRRMT CTVSYASEDE 60
61 AARALLDGAS FQGHLFDISY ADNETAPAQK TEEWVDPDIQ AELSALQSGW RNEYGSGKPI 120
121 K
|
| Detection Method: |  |
| Confidence: | 3.14 |
| Match: | 1whxA |
| Description: | Solution structure of the second RNA binding domain from hypothetical protein BAB23448 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.07267754227671 | bayes_pls_golite062009 |
| binding | 2.14220509119821 | bayes_pls_golite062009 |
| mRNA binding | 1.8272533737271 | bayes_pls_golite062009 |
| protein binding | 0.825412428838605 | bayes_pls_golite062009 |
| nucleic acid binding | 0.698120867472476 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.0341340403989611 | bayes_pls_golite062009 |
|
Region A: Residues: [122-287] |
1 11 21 31 41 51
| | | | | |
1 KPQNGSSGSG GSSMLPAIPV GPATAPVSRD RTPAQLRDLE NMMRRPAHTS EEKFSVLDAR 60
61 DKLLRLNRTQ HKLSGATQGH CADMCPEKER VLREFQRQVA YYELQPGSDE LICHERALKQ 120
121 YSRSSADQET PLPHELRNET ALHMTMSYLM HEIMDISERQ DPQSHM
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [288-499] |
1 11 21 31 41 51
| | | | | |
1 GDWFHFVWDR TRSIRKEITQ QELCSLGAVK LVEQCARFHI HCAARLVDAD PSVFDSKINA 60
61 ENLTKCLQTL KYMYHDLRIK GVPCPKEAEF RGYIVLLNLA DANFLWDIGQ LPAELQSCPE 120
121 VRQAIQFYLA LQDTNFVRFF QLLADKDTSY LSACILVNYF TRLRVLGLHR LIQAYRSPRK 180
181 DEVSSLPLSY IAELLSFASE QEAADFVQHY GL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [500-602] |
1 11 21 31 41 51
| | | | | |
1 QINEAGRVVL SRMHTVETEY KLPRQYELVE VKRVKSVGEV VSGEPLPPRD LYLNHRPHNS 60
61 FDDYGMLKSI AWTAKDQLAG MQQEEMQPQM PSQPPAVSKH SDT
|
| Detection Method: | |
| Confidence: | 3.69897 |
| Match: | 1dg3A |
| Description: | Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [603-959] |
1 11 21 31 41 51
| | | | | |
1 LFKVPMQPDG TAAGFGVFAA AAVPPASSID GFSFVLPKSR AQEFQEQAPA TQQRRAQEEA 60
61 KHQALQVAIA AAKKREAELM AIHEAKVAEA ERVRQQKLRE RQEQQRRQQQ ELEEQRQREQ 120
121 EKLQLEKERQ LKLEQLFFVQ QQEREAHKQT RTLELYQEIF QDTLAEICQS EFMSHSRACR 180
181 SYESMLDSIT RDLVERQMEQ SIYELGVMRV CIRRWRKYRR TQQEKDTLFN QLPLSFGAEN 240
241 PEGVVNKRSM EDSLRLSRRY RLGEPCDYGK LLAGLEEHSW LKLDLWHVLD KCLPVAQPGA 300
301 RRFYKLLISL SGGQEGLQLN CDLDRGLLQQ PQSPDARFVD GGYIRGFSQG IGLSVMK
|
| Detection Method: | |
| Confidence: | 20.045757 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [960-1066] |
1 11 21 31 41 51
| | | | | |
1 IRDDDHDWKA TDLAEANGII CLIGLDDIRL LPDRLKPLLQ ASRCHDVAVI VQHPANTAFV 60
61 QPDIPLQELC LRSFNIFRLR KSGNNRQRLM IALESAVKFL AKATERK
|
| Detection Method: | |
| Confidence: | 6.39794 |
| Match: | 2dfsA |
| Description: | No description for 2dfsA was found. |
|
Region A: Residues: [1067-1289] |
1 11 21 31 41 51
| | | | | |
1 RVGHLHQVET REYLLVNLGS ELFRRLKYAA EHDTAIRSDT QLNPQRCVDL FNEAVHRLQL 60
61 VAGEDLSDWP QFPEELRVFV QPLPIESSLN TNRLEHFEPG WHLPERRQRI VQLLERCKLP 120
121 KMPVLPRSSS LAEAQCQWVL DYAQISQQED CVEQIALQAI KILQYDTDDY LNFVEYLAGE 180
181 RMQYILRQER NPPQGIVYNT KTLKRRFLSA WYYEFREPQI YEP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1290-1370] |
1 11 21 31 41 51
| | | | | |
1 VPAEENAQML EKQPSSQAEV QQLDFDEITS KAEAVLKRFH QRQDERHTLR ELNRSHKSRK 60
61 RRDASDHKHA SKHKRKRSKS K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
