YRC Public Data Repository - Protein Structure Prediction

Protein:	sing-PA
Organism:	Drosophila melanogaster
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sing-PA.

Description	E-value	Query Range	Subject Range
gi\|195480804, gi... - gi\|33329009\|gb\|AAQ09911.1\| CG13011 [Drosophila yakuba], gi\|195480804\|ref\|XP_002101399.1\| GE17611 [Dr...	294.0	[0..1]	[176..1]
gi\|54643284\|gb\|E... - GA11974-PA [Drosophila pseudoobscura], GA11974 [Drosophila pseudoobscura pseudoobscura] gi\|54643284, gi\|... - gi\|54643284\|gb\|EAL32028.1\| GA11974 [Drosophila pseudoobscura pseudoobscura], gi\|125981937\|ref\|XP_001...	284.0	[0..1]	[176..1]
gi\|108874425, gi... - gi\|157123317\|ref\|XP_001660113.1\| hypothetical protein AaeL_AAEL009493 [Aedes aegypti], gi\|108874425\|...	231.0	[0..14]	[174..30]
gi\|55243515, gi\|... - gi\|58380842\|ref\|XP_310825.2\| ENSANGP00000014887 [Anopheles gambiae str. PEST], gi\|55243515\|gb\|EAA065...	231.0	[0..14]	[174..1]
gi\|110762000 - gi\|110762000\|ref\|XP_001122399.1\| PREDICTED: similar to CG13011-PA [Apis mellifera]	142.0	[0..26]	[176..34]
gi\|91090155 - gi\|91090155\|ref\|XP_972292.1\| PREDICTED: similar to CG13011 CG13011-PA [Tribolium castaneum]	126.0	[0..30]	[162..36]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFGVRGMG QPLGIRICCC RVCTCINFGF VLSRIGLLKL MQLGLAMLCE GLLIRYGVPY  60
   61 ADSIGQALTS FLATTGHCFT TTGILLLCYA FSDKSYSLIR QSLFETLFNG LASCMYFSSS 120
  121 SYMGFACVVW LHPQFLVRPG FWAYPAMTAC YYMGYAAGIL HALDAYLAFR HFRGAR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.823909
Match:	PF01284.14
Description:	No description for PF01284.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits