YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0309143, crl-PA
Organism:	Drosophila melanogaster
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309143, crl-PA.

Description	E-value	Query Range	Subject Range
gi\|62738886 - gi\|62738886\|pdb\|1Z2U\|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme...	208.0	[0..2]	[163..2]
gi\|157117021, gi... - gi\|157117021\|ref\|XP_001652937.1\| ubiquitin-conjugating enzyme E2 g [Aedes aegypti], gi\|108876221\|gb\|...	207.0	[0..1]	[167..1]
gi\|111060478, gi... - gi\|169615867\|ref\|XP_001801349.1\| hypothetical protein SNOG_11099 [Phaeosphaeria nodorum SN15], gi\|11...	207.0	[0..1]	[165..1]
gi\|37590333, gi\|... - gi\|41152425\|ref\|NP_955958.1\| ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) [Danio rerio...	207.0	[0..5]	[163..2]
gi\|116487484, gi... - gi\|118404876\|ref\|NP_001072891.1\| ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog) [Xenopus (Silur... gi\|54311502, gi\|... - gi\|54311502\|gb\|AAH84849.1\| LOC495381 protein [Xenopus laevis], gi\|49899030\|gb\|AAH76728.1\| Ube2d2-pro...	207.0	[0..5]	[163..2]
gi\|109509992 - gi\|109509992\|ref\|XP_001080152.1\| PREDICTED: similar to ubiquitin-conjugating enzyme E2D 1, UBC4/5 ho...	206.0	[0..6]	[163..240]
gi\|109066782 - gi\|109066782\|ref\|XP_001096263.1\| PREDICTED: similar to ubiquitin-conjugating enzyme E2D 4 (putative)... gi\|114613001, gi... - gi\|114613001\|ref\|XP_519070.2\| PREDICTED: ubiquitin-conjugating enzyme E2D 4 (putative) isoform 4 [Pa... UBE2D4 - ubiquitin-conjugating enzyme E2D 4 (putative)	206.0	[0..5]	[163..2]
gi\|456568 - gi\|456568\|gb\|AAA64427.1\| ubiquitin conjugating enzyme	206.0	[0..5]	[163..2]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSALRRLM AEYKQLTLDP PEGIVAGPIS EDNFFEWEAL IAGPEGTCFE GGVFPARLIF  60
   61 PTDYPLSPPK MKFTCDMFHP NIFADGRVCI SILHAPGDDP MGYELSAERW SPVQSVEKIL 120
  121 LSVVSMLAEP NDESGANVDA AIMWREQRDE FNAIARRLVR KTLGLPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.221849
Match:	2cyxA
Description:	No description for 2cyxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits