YRC Public Data Repository - Protein Structure Prediction

Protein:	Pros28.1-PA
Organism:	Drosophila melanogaster
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Pros28.1-PA.

Description	E-value	Query Range	Subject Range
PSA7L_MOUSE - Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=1 SV=1	275.0	[0..1]	[249..1]
PSA7L_MACFA - Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1	268.0	[0..1]	[232..1]
gi\|157820507, gi... - gi\|157820507\|ref\|NP_001102354.1\| hypothetical protein LOC364814 [Rattus norvegicus], gi\|149015674\|gb...	267.0	[0..1]	[234..1]
gi\|68303563, gi\|... - gi\|68303563\|ref\|NP_001020267.1\| proteasome alpha 8 subunit isoform 2 [Homo sapiens], gi\|27503801\|gb\|...	265.0	[0..1]	[232..1]
PSA7_CARAU - Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1	263.0	[0..1]	[231..1]
PSA7_BOVIN - Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1	263.0	[0..5]	[231..3]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRYDRAVT IFSPDGHLLQ VEYAQEAVRK GSTAVGVRGA NCVVLGVEKK SVAQLQEDRK  60
   61 VRKICMLDNH VVMAFAGLTA DARIMINRAQ VECQSHRLNV EDPVTLEYIT RFIAQLKQKY 120
  121 TQSNGRRPFG ISCLIGGFDA DGSAHLFQTE PSGIFYEYKA NATGRSAKVV REFFEKSYRE 180
  181 EEVANEHGAV KLAIRALLEV AQSGQNNLEV AIMENGKPLK MLDTDVITDY VKIIEKEKEE 240
  241 ELEKKKQKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.045757
Match:	1iruD
Description:	Proteasome alpha subunit (non-catalytic)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits