YRC Public Data Repository - Protein Structure Prediction

Protein:	CG12395-PA
Organism:	Drosophila melanogaster
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG12395-PA.

Description	E-value	Query Range	Subject Range
SPEF1 - sperm flagellar 1	227.0	[0..6]	[214..2]
gi\|114680691 - gi\|114680691\|ref\|XP_001161874.1\| PREDICTED: hypothetical protein [Pan troglodytes]	227.0	[0..6]	[214..2]
SPEF1_MOUSE - Sperm flagellar protein 1 OS=Mus musculus GN=Spef1 PE=2 SV=1	225.0	[0..7]	[214..3]
gi\|73991903 - gi\|73991903\|ref\|XP_542915.2\| PREDICTED: similar to Protein C20orf28 homolog [Canis familiaris]	222.0	[0..6]	[214..2]
gi\|109092738 - gi\|109092738\|ref\|XP_001115387.1\| PREDICTED: similar to Sperm flagellar protein 1 [Macaca mulatta]	221.0	[0..6]	[214..2]
gi\|41056109, gi\|... - gi\|41056109\|ref\|NP_956821.1\| calponin-homology and microtubule-associated protein [Danio rerio], gi\|...	220.0	[0..7]	[208..5]
SPEF1_BOVIN - Sperm flagellar protein 1 OS=Bos taurus GN=SPEF1 PE=2 SV=1	217.0	[0..6]	[214..2]
gi\|220944768, gi... - gi\|220954554\|gb\|ACL89820.1\| CG16719-PA [synthetic construct], gi\|220944768\|gb\|ACL84927.1\| CG16719-PA... CG16719-PA - This gene is referred to in FlyBase by the symbol Dmel\CG16719 (CG16719, FBgn0036029). It is a prote...	203.0	[0..9]	[211..1]
gi\|12018304, gi\|... - gi\|5922723\|gb\|AAD56310.1\|AF102129_1 KPL2 [Rattus norvegicus], gi\|12018304\|ref\|NP_072142.1\| sperm fla...	201.0	[0..17]	[222..5]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIVSGKNLS REELEEVNKW MQQNSISTQR LRREFSDVLP LAEIFKRDYP RLVDLFNYPK  60
   61 KSSVQLKLAN WETFNFKVLS KLNMTLTKDF MEQMANGVSG AAEVMLHEVI RLEKRQRLAE 120
  121 QR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.522879
Match:	2ee7A
Description:	No description for 2ee7A was found.

Predicted Domain #2

Region A:
Residues: [123-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAALRQEQLW EENDEIKTVV VNKQIGDGIV QVPQKMILYS LYEKVERDSH AKDVIIDAYQ  60
   61 QRLTHMESII KLKTERIDEL LMQMGKQPQK RATSNATNCF FAYDGKNSLI QKHISPTQAS 120
  121 SPTHLDADGF NI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits