YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0309269, CG9...
Organism:	Drosophila melanogaster
Length:	611 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309269, CG9....

Description	E-value	Query Range	Subject Range
gi\|108812648, gi... - gi\|108812648\|ref\|YP_648415.1\| ABC transporter ATP-binding protein [Yersinia pestis Nepal516], gi\|108... gi\|166207432, gi... - gi\|166211661\|ref\|ZP_02237696.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Antiqua... gi\|22126556, gi\|... - gi\|22126556\|ref\|NP_669979.1\| ABC transporter ATP-binding protein [Yersinia pestis KIM], gi\|21959559\|... gi\|108806784, gi... - gi\|108806784\|ref\|YP_650700.1\| ABC transporter ATP-binding protein [Yersinia pestis Antiqua], gi\|1087... gi\|167421800, gi... - gi\|167421800\|ref\|ZP_02313553.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Orienta... gi\|45436066, gi\|... - gi\|45441206\|ref\|NP_992745.1\| ABC transporter ATP-binding protein [Yersinia pestis biovar Microtus st... gi\|165939634, gi... - gi\|165939634\|ref\|ZP_02228178.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Orienta... gi\|166012112, gi... - gi\|166012112\|ref\|ZP_02233010.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Antiqua... gi\|162419791, gi... - gi\|162419791\|ref\|YP_001607368.1\| ABC transporter ATP-binding protein [Yersinia pestis Angola], gi\|16... gi\|165923540, gi... - gi\|165924480\|ref\|ZP_02220312.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Orienta... gi\|145598768, gi... - gi\|145598768\|ref\|YP_001162844.1\| ABC transporter ATP-binding protein [Yersinia pestis Pestoides F], ... gi\|167057191, gi... - gi\|167424342\|ref\|ZP_02316095.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Mediaev...	482.0	[0..70]	[592..54]

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Predicted Domain #1

Region A:
Residues: [1-507]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAAKKREA QKKKDARNKK IQQIPSTKKA NGVPERELTE EEKLCAKLEE EARISAEARS  60
   61 CTGSLAVHPR SRDVKIANFS ITFFGSELLQ DTMLELNCGR RYGLIGLNGC GKSSLLAVLG 120
  121 GREVPVPPHI DIFHLTREIP ASSKSALQCV MEVDEERIKL EKLAEELAMS EEDDAQEQLI 180
  181 DIYERLDDMS ADLAEVKAAR ILHGLGFDKA MQQKQAKDFS GGWRMRIALA RALFVKPHLL 240
  241 LLDEPTNHLD LDACVWLEEE LKTYKRILVL ISHSQDFLNG VCTNIIHLTG KRLKYYTGNY 300
  301 EAFVRTRMEL LENQMKQYNW EQDQISHMKN YIARFGHGSA KLARQAQSKE KTLAKMVAQG 360
  361 LTEKVSDDKV LNFYFPSCGK VPPPVIMVQN VNFRYNDETP WIYKNLEFGI DLDTRLALVG 420
  421 PNGAGKSTLL KLLYGDLVPT SGMIRKNSHL RIARYHQHLH ELLDLDASPL EYMMRAFPDV 480
  481 KEKEEMRKII GRYGLTGRQQ VCPIRQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.0
Match:	2iw3A
Description:	No description for 2iw3A was found.

Predicted Domain #2

Region A:
Residues: [508-611]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDGQRCRVVF AWLAWQVPHL LLLDEPTNHL DMETIDALAD AINDFDGGMV LVSHDFRLIN  60
   61 QVAEEIWVCE KETVTKWKGG ILDYKDHLKN KITSENEKKA KAGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	2nq2C
Description:	No description for 2nq2C was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits