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View Structure Prediction Details

Protein: Grip128-PB
Organism: Drosophila melanogaster
Length: 1092 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Grip128-PB.

Description E-value Query
Range
Subject
Range
gi|12054034 - gi|12054034|emb|CAC20096.1| gamma-tubulin ring protein [Drosophila melanogaster]
808.0 [0..1] [1092..1]

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Predicted Domain #1
Region A:
Residues: [1-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPAQKGNL RKRSGKTSTA VNSAINENVR KLVRSLSEPG TSQKKLRQME DTALKIIANQ  60
   61 RRTWAPTTTD MEVKRNLDDL AERFRAEGMA SFGESIKDLA IRYLAMDENQ QQFNPNPGWQ 120
  121 MLELLFRIAD RPVQKIRLNR EFMEQRRLSI INSMEEAERQ AQIEEQAKLE AAKNTSETEV 180
  181 DWAALLSEDF L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [192-365]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPPEDDSSDS LSDWSEESDC DSTTTLKPDE NIGVSRSLLE MARVYEQAMM AVVPTGSVNK  60
   61 TYMPPEQSVI RSYDFRIMKP TVLSLNNLKG SHLRRSKLLQ LPPPQPPRPF TQYWQSGNTD 120
  121 TLFRKIHSHW WCQDVHLNAL PSSAKPLDNF AVSYVQFLNH NARGLLALPV PKTI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [366-633]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEPCLLREIL FMFVRPASCC FFEFDKATRR ITVRDNVSIC TVTASTMQNF LLFDVVPALE  60
   61 DMMELRHIID THTLHFHGVK TTYTVEFFAY GLRDLVQPIC QLLIAYEDRV NKDPAKNTLI 120
  121 RFTIEFREHF SQLRLLRELA EDVILDKGPA HIRSAYLLSR LYKHTLLQVP HQKLATALLF 180
  181 ISLKRYCIII DGWWRRAALE DHLREFIVEF CYEEDANTRS HVRKRNMGME DDLLLVEIFN 240
  241 KLQSCPLYQL LLEHALESGE TQDLLCSV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [634-737]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTLSEMLTSN NEIQLPSLHD ELFTQFFAQL KVYCGADNTD YEDEPEPDKD YEDLTVCNRQ  60
   61 GIRNHELFAI FTQPLVEQRL ERQRERLKSN PVLMANILKR LERS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [738-826]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TCLQLKSELP EALREILRRR QWLANEYAIR AYCKETQVAE KMRFLRHTML LEKYYLFVPY  60
   61 YNALFVRMEK NNSWALGSVL TSKLCAVLL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [827-1092]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHYPQLAHYL HVKLISQINS NSIKVYEALE AIELDFERPM AMHQWYILTP AHMQDYNSVW  60
   61 RLMLKVKWAV WKLENMQFLR RARFNPCAPL DLIGLTIRRL EIVRFWLIFL INNLHAHIME 120
  121 AVSRQFELRI GECKNVRELR IMHDEHLAWL KTHCMLTDEF KAFRVALDQI FHLVYVLDME 180
  181 WTTCASCMHD HDALCLDVTI SDDGIDDSET QRRSLEYLAL NQVAEIELTY IRCHQMLADI 240
  241 LNTLVHQNDH GFLSALEETI NSSVPH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle