YRC Public Data Repository - Protein Structure Prediction

Protein:	CG5548-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG5548-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|38048555, gi\|... - gi\|38048555\|gb\|AAR10180.1\| similar to Drosophila melanogaster CG5548 [Drosophila yakuba], gi\|1954787...	191.0	[0..1]	[117..1]
NDUB7_MOUSE - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Mus musculus GN=Ndufb7 PE=1 SV=3	180.0	[0..1]	[103..1]
gi\|109123688 - gi\|109123688\|ref\|XP_001111436.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcom...	178.0	[0..1]	[117..1]
NDUFB7 - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa gi\|123981992, gi... - gi\|123996819\|gb\|ABM86011.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa [synthetic c...	178.0	[0..1]	[117..1]
gi\|38328313, gi\|... - gi\|41053587\|ref\|NP_957142.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa [Danio reri...	178.0	[0..1]	[117..1]
gi\|54643926\|gb\|E... - GA18962-PA [Drosophila pseudoobscura], GA18962 [Drosophila pseudoobscura pseudoobscura] gi\|54643926, gi\|... - gi\|54643926\|gb\|EAL32669.1\| GA18962 [Drosophila pseudoobscura pseudoobscura], gi\|125983690\|ref\|XP_001...	178.0	[0..1]	[117..1]
NDUB7_PONPY - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Pongo pygmaeus GN=NDUFB7 PE=2 SV=3 gi\|111662058 - gi\|111662058\|gb\|ABH12200.1\| mitochondrial complex I subunit NDUFB7 [Gorilla gorilla] NDUB7_GORGO - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Gorilla gorilla gorilla GN=NDUFB7 PE=... NDUB7_PONAB - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Pongo abelii GN=NDUFB7 PE=2 SV=3 gi\|55648479 - gi\|55648479\|ref\|XP_524135.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	177.0	[0..1]	[117..1]
NDUB7_BOVIN - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Bos taurus GN=NDUFB7 PE=1 SV=2	177.0	[0..1]	[103..1]
NDUB7_PANTR - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Pan troglodytes GN=NDUFB7 PE=2 SV=3	176.0	[0..1]	[117..1]
gi\|157823197, gi... - gi\|34851467\|ref\|XP_341665.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	174.0	[0..1]	[100..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNALTHYMK PDVMPGPDVV PTFDPLLGFK SRKERVMIAT QEEMESAKLP LEFRDYCAHL  60
   61 AIAYQACRSD TFPFVYKCAH QKHEYLTCEY EDYVLRMKEF ERERRLLERQ KRLNKAA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	96.19382
Match:	PF05676.4
Description:	No description for PF05676.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.540	N/A	N/A	a.29.2	Bromodomain
View	Download	0.529	N/A	N/A	a.29.2	Bromodomain
View	Download	0.391	N/A	N/A	c.55.1	Actin-like ATPase domain
View	Download	0.343	N/A	N/A	a.288.1	Description not found.
View	Download	0.340	N/A	N/A	a.7.7	BAG domain
View	Download	0.334	N/A	N/A	a.29.2	Bromodomain
View	Download	0.334	N/A	N/A	a.29.2	Bromodomain
View	Download	0.333	N/A	N/A	d.95.2	Homing endonucleases
View	Download	0.284	N/A	N/A	d.95.2	Homing endonucleases
View	Download	0.284	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits