YRC Public Data Repository - Protein Structure Prediction

Protein:	CG1368-PA
Organism:	Drosophila melanogaster
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG1368-PA.

Description	E-value	Query Range	Subject Range
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	230.0	[0..3]	[185..1506]
gi\|9943, gi\|66976 - gi\|9943\|emb\|CAA34560.1\| unnamed protein product [Plasmodium falciparum], pir\|\|RNZQ2L DNA-directed RN... RPB1_PLAFD - DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium falciparum (isolate CDC / Honduras) GN=RPI...	227.0	[0..2]	[186..2161]
gi\|46228363 - gi\|46228363\|gb\|EAK89262.1\| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' ... gi\|66359288 - gi\|66359288\|ref\|XP_626822.1\| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit...	226.0	[0..4]	[184..1683]
gi\|54657094 - gi\|54657094\|gb\|EAL35927.1\| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu... gi\|67597591 - gi\|67597591\|ref\|XP_666157.1\| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...	225.0	[0..4]	[184..1676]
gi\|7494259 - pir\|\|T18492 hypothetical protein C0805w - malaria parasite (Plasmodium falciparum) gi\|124505021, gi... - gi\|3758846\|emb\|CAB11131.1\| DNA-directed RNA polymerase II, putative [Plasmodium falciparum 3D7], gi\|...	224.0	[0..2]	[186..2159]
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	210.0	[0..3]	[180..1512]
gi\|71019559, gi\|... - gi\|71019559\|ref\|XP_760010.1\| hypothetical protein UM03863.1 [Ustilago maydis 521], ref\|XP_401478.1\| ...	195.0	[0..4]	[182..1546]
gi\|29539342 - gi\|29539342\|dbj\|BAC67672.1\| DNA-directed RNA polymerase II largest subunit [Cyanidioschyzon merolae]	192.0	[0..10]	[184..1629]
gi\|4092885, gi\|7... - pir\|\|T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Nosema locustae, gi\|4092885\|...	192.0	[0..45]	[185..1403]
gi\|134089267, gi... - gi\|50257749\|gb\|EAL20450.1\| hypothetical protein CNBE3710 [Cryptococcus neoformans var. neoformans B-... gi\|58267574, gi\|... - gi\|58267574\|ref\|XP_570943.1\| DNA-directed RNA polymerase ii largest subunit [Cryptococcus neoformans...	192.0	[0..1]	[184..1531]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLIAFALF ACVAADVSHL SNEYLPPVQS SYAAPSVSYS APAVQQTYAA PAIQQSYVAP  60
   61 SNEYLPPVQT YSAPAVQRTY SAPAVQRTYS APSVSYSAPS VSYSAPSVSY SAPAVQQSYS 120
  121 APSVSYSAPA VQQSYSAPSV SYSAPAVQQS YSAPAVSYSA PSVSYSAPSV DVGTQYASNG 180
  181 GYVYRK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.26
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits