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View Structure Prediction Details

Protein: CG11162-PA
Organism: Drosophila melanogaster
Length: 278 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG11162-PA.

Description E-value Query
Range
Subject
Range
gi|73954145 - gi|73954145|ref|XP_546281.2| PREDICTED: similar to CG1998-PA [Canis familiaris]
240.0 [0..8] [274..310]
gi|116130817, gi... - gi|119115400|ref|XP_311061.3| ENSANGP00000023718 [Anopheles gambiae str. PEST], gi|116130817|gb|EAA0...
224.0 [0..8] [274..96]
gi|109488129 - gi|109488129|ref|XP_001077260.1| PREDICTED: similar to CG1998-PA [Rattus norvegicus]
221.0 [0..8] [270..152]
gi|91080745 - gi|91080745|ref|XP_966455.1| PREDICTED: similar to CG1998 CG1998-PA [Tribolium castaneum]
220.0 [0..8] [274..93]
CG1998-PA, FBpp0... - This gene is referred to in FlyBase by the symbol Dmel\CG1998 (CG1998, FBgn0030485). It is a protein...
214.0 [0..8] [276..128]
gi|125980601, gi... - gi|54642631|gb|EAL31377.1| GA10807 [Drosophila pseudoobscura pseudoobscura], gi|125980601|ref|XP_001...
gi|195173855, gi... - gi|195173855|ref|XP_002027700.1| GL22644 [Drosophila persimilis], gi|194114646|gb|EDW36689.1| GL2264...
gi|125980601|ref... - GA10807-PA [Drosophila pseudoobscura], GA10807 [Drosophila pseudoobscura pseudoobscura]
213.0 [0..1] [277..1]
gi|66547077 - gi|66547077|ref|XP_623096.1| PREDICTED: similar to CG1998-PA isoform 1 [Apis mellifera]
212.0 [0..8] [274..57]

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Predicted Domain #1
Region A:
Residues: [1-75]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTLLAGWTQ SGDYLQDKWT LLLDTVGEES WRLWVVGSTV VIFIVYWLYA GIFTLMDITN  60
   61 RPRFLRKYKI QPGQN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [76-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPVNLAKLWH AVKVVLFNLT VVNFLVSWVV YEFVYKSENS QDIRVLPTFK RSLRDLVVFV  60
   61 VLEEIMFYYA HRLLHHRSVY KYVHKKHHEW TAPIAAITLY AHPVEHVLAN LLPVATSIAI 120
  121 LGTHVALAYV IFALAIINSM SDHTGYSFPW SAGSVRFHDY HHAKFNYNYG VLGFLDKLHG 180
  181 TYRAPAEQKA PSQRIKKIKK KSK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 27.130768
Match: PF04116.4
Description: No description for PF04116.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle